View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_54 (Length: 395)
Name: NF6876A_low_54
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 23333448 - 23333840
Alignment:
| Q |
1 |
gcaatttatcttatgccctgtcgtgcacatcttcgtaatgacgactttaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcag |
100 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23333448 |
gcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcag |
23333547 |
T |
|
| Q |
101 |
catattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333548 |
catattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcat |
23333647 |
T |
|
| Q |
201 |
ctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333648 |
ctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaac |
23333747 |
T |
|
| Q |
301 |
agcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23333748 |
agcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgt |
23333840 |
T |
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