View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_56 (Length: 386)
Name: NF6876A_low_56
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_56 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 32062875 - 32062506
Alignment:
| Q |
17 |
aacatcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggac |
116 |
Q |
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| T |
32062875 |
aacatcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggac |
32062776 |
T |
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| Q |
117 |
gttgtttctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnn |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062775 |
gttgtttctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttt |
32062676 |
T |
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| Q |
217 |
nnnccgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062675 |
tttccgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattg |
32062576 |
T |
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| Q |
317 |
ttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtctattggcttcccaaacatgt |
386 |
Q |
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|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062575 |
ttctccggtgcattctcttgcttcagtgaccttttctttctaacaaagtctattggcttcccaaacatgt |
32062506 |
T |
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