View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_59 (Length: 382)
Name: NF6876A_low_59
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 47741173 - 47741543
Alignment:
| Q |
1 |
tcataacaacggcagaatggacattccattcggtggaaaagtggttgtacttggtggtgatttcagacagattctacctgttgtacccaaagcaaatagg |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47741173 |
tcataacaacggtagaatggacattccattcggtggaaaggtggttgtacttggtggtgatttcagacagattctacatgttgtacccaaagcaaatagg |
47741272 |
T |
|
| Q |
101 |
gaagaagtttttaattctagcgttaattcgtcggccatatggcgccactgtgaagtgctaatgttgacaacaaacatgaggctcttgcatggttgttcaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47741273 |
caagaagttgttaattctagcgttaattcgtcggccatatggcgccattgtgaagtgctaacgttgacaacaaacatgaggctcttgcatggttgttcaa |
47741372 |
T |
|
| Q |
201 |
gggaggaggttaaagaaagaaaacaattcagcgactgggttttaggaatcggtgatgtgatcattggtgaagttattgatgatgatattagggtgcaaat |
300 |
Q |
| |
|
| |||||| || |||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47741373 |
gcgaggagcttgaagaaagaaaacaattcagcgactggattttaggaatcggtgatgggagcattggtgaagttattgacgatgatattagggtgcaaat |
47741472 |
T |
|
| Q |
301 |
ttcagatgatatacttattcatagcacatataaccatattgctgctattgttgatgctatatattcatctc |
371 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
47741473 |
tccagatgatatacttattcatagcacaggtaaccatattgctgctattgttggtgctatatatccatctc |
47741543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 2268395 - 2268024
Alignment:
| Q |
1 |
tcataacaacggcagaatggacattccattcggtggaaaagtggttgtacttggtggtgatttcagacagattctacctgttgtacccaaagcaaatagg |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2268395 |
tcataacaacggcaggatggacattccattcggtggaaaagtggttgtacttggtggtgatttcagacaaattctacatgttgtacccaaagcaaatagg |
2268296 |
T |
|
| Q |
101 |
gaagaagtttttaattctagcgttaattcgtcggccatatggcgccactgtgaagtgctaatgttgacaacaaacatgaggctcttgcatggttgttcaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2268295 |
caagaagttgttaattctagcgttaattcgtcgtccatatggcgccattgttaagtgctaacattgacagcaaacataaggctcttgcatggttgttcaa |
2268196 |
T |
|
| Q |
201 |
gggaggaggttaaagaaag-aaaacaattcagcgactgggttttaggaatcggtgatgtgatcattggtgaagttattgatgatgatattagggtgcaaa |
299 |
Q |
| |
|
| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2268195 |
gcgaggaggttgaagaaagaaaaaaaattcagcgactgggttttaggaatcggtgatgggagcattgttgaagttattgatgatgatattagggtgcaaa |
2268096 |
T |
|
| Q |
300 |
tttcagatgatatacttattcatagcacatataaccatattgctgctattgttgatgctatatattcatctc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2268095 |
tttcagatgatatacttattcatagcacatgtgaccatattgctgctattgttgatgctatatatccatctc |
2268024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 331 - 369
Target Start/End: Original strand, 36154943 - 36154981
Alignment:
| Q |
331 |
taaccatattgctgctattgttgatgctatatattcatc |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36154943 |
taaccatattgctgctattgttgatgctatatatccatc |
36154981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 29132732 - 29132789
Alignment:
| Q |
213 |
aagaaagaaaacaattcagcgactgggttttaggaatcggtgatgtgatcattggtga |
270 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||||| | ||||||||| |
|
|
| T |
29132732 |
aagaaagaaaacaattcagcgagtgggtgctaggtatcggtgatggtagcattggtga |
29132789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 22422584 - 22422636
Alignment:
| Q |
32 |
ggtggaaaagtggttgtacttggtggtgatttcagacagattctacctgttgt |
84 |
Q |
| |
|
||||||||||| |||||| | ||||| ||||||||||||||||| || ||||| |
|
|
| T |
22422584 |
ggtggaaaagttgttgtattgggtggagatttcagacagattctgccggttgt |
22422636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 11836261 - 11836313
Alignment:
| Q |
32 |
ggtggaaaagtggttgtacttggtggtgatttcagacagattctacctgttgt |
84 |
Q |
| |
|
||||||||||| |||||| | ||||| ||||||||||||||||| || ||||| |
|
|
| T |
11836261 |
ggtggaaaagttgttgtattgggtggagatttcagacagattctgccggttgt |
11836313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University