View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_63 (Length: 378)
Name: NF6876A_low_63
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_63 |
 | |
|
| [»] chr1 (6 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 13868107 - 13867730
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13868107 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtagcacaatgtagaaataaatgagaaacag |
13868008 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13868007 |
actctgccatgccacacccagtaacacacaatgctgcctcgccaacaatgataccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
13867908 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13867907 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatctggaggttgaacctgagctgtaagttgttga |
13867808 |
T |
|
| Q |
301 |
tagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaacg |
378 |
Q |
| |
|
||| || || |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
13867807 |
taggcatctatcaccgtgtaaccgtaatcagaatcggagtcccattgccacctgtcagaaatatcagactgcaaaacg |
13867730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 196 - 378
Target Start/End: Original strand, 45795267 - 45795449
Alignment:
| Q |
196 |
aacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagtt |
295 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45795267 |
aacaatccccaagcaaaaatggaaaccttaagcggcacctgattatgccaaataaggtctccaatggaagcatctggaggttgaacctgagctgtcagtt |
45795366 |
T |
|
| Q |
296 |
gttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaacg |
378 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
45795367 |
gttgatagacacctctcaccgtgtaaccacaatcagaatcggagtcccattgccacctgtcagaaatatcagactgcaaaacg |
45795449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 377
Target Start/End: Complemental strand, 26510646 - 26510273
Alignment:
| Q |
4 |
atattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagact |
103 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| |||||| |||||| | ||||||||| ||||| ||| | |||||||| ||||| || |||| |||||| |
|
|
| T |
26510646 |
atattaaaggggtcaacacctgacattccgatccaagacctgatatgatgccacaatgtaccgaaaatggcacaatgaataaacaagtgaggcgcagact |
26510547 |
T |
|
| Q |
104 |
cagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatct |
203 |
Q |
| |
|
| || |||| || || |||||||||| |||| ||| | |||| | ||||| | | ||| | |||||||||||||||||| ||||| ||||| | |
|
|
| T |
26510546 |
cttccttgccgcatcctgtaacacacataactgcttcggtattgattactccacgtctcataagattattcttagtcggcaacctgtcccgcaacaaccg |
26510447 |
T |
|
| Q |
204 |
ccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttgatag |
303 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| || | | ||||| |||| | | ||||| ||||||||||| |||| |
|
|
| T |
26510446 |
tcaagcaaagatggagaccttcagcggcacttgcttatgccagataagatctcccatagtaccatctggaggatcagtctgagttgtcagttgtttatag |
26510347 |
T |
|
| Q |
304 |
acacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaac |
377 |
Q |
| |
|
| ||||||||| |||||||| | | || |||| ||||| |||||||||| ||||||| |||| ||||||||| |
|
|
| T |
26510346 |
aaacctctcacagtgtaaccaccagcaaaatcagagtcccattgccacctgtcagaaagatcatactgcaaaac |
26510273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 33150843 - 33150937
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgaga |
95 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||||| |||||| || ||||||||| | |||||||| || || || |||||||||||||| |
|
|
| T |
33150843 |
tcaatattaagggggtcggcacctgacattccgatccaagacctgataagatgccacaatgagccaaaagtggcgcagtgaataaataaatgaga |
33150937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 5808740 - 5808801
Alignment:
| Q |
171 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggca |
232 |
Q |
| |
|
|||||||||||||||||| || || ||||| | ||||||||| || |||||||| ||||||| |
|
|
| T |
5808740 |
attcttagtcggcaacctgtctcgcaacaaccgccaagcaaagatagaaacctttagcggca |
5808801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 50730085 - 50730133
Alignment:
| Q |
199 |
aatctccaagcaaaaatggaaaccttaagcggcacctgattatgccaga |
247 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||| || ||||||| |
|
|
| T |
50730085 |
aatctccaagcaaaaatggacaccttcagcggtacctgtttgtgccaga |
50730133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 43517022 - 43516645
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43517022 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgataaaatgccacaaagtaccgaaagtagcacaatgtataaataaatgagaaacag |
43516923 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
||| | |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
|
|
| T |
43516922 |
actatgtcatgccgcacccagtaacacacaatgctacctcgccaacgatgatgccacgccggaggagatgattcttagtcggcaacctatcccataacaa |
43516823 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
43516822 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataagatctccaatggtagcatctggaggttgaacctgagctgtcggttgttga |
43516723 |
T |
|
| Q |
301 |
tagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaacg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
43516722 |
tagacacctctcaccgtgtaaccgcaatcagaatcaaagtcccattgccacctctcagaaatatcagactgcaaaacg |
43516645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 20543933 - 20544189
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| |||||| |||||| || ||||||||| | ||||||||| || || || |||||||||||||| || |
|
|
| T |
20543933 |
tcaatattaaaggggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaataaatgagatgtag |
20544032 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
||| |||| || ||||| || ||||||| || |||||| |||| |||||||||| ||||| || |||||||||||||||||||| || || || |
|
|
| T |
20544033 |
tctcttccataccgcaccctgtgacacacatacttgtctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacctatctcgcaataa |
20544132 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
257 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
20544133 |
tcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccatataagatctcc |
20544189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 38295784 - 38295820
Alignment:
| Q |
190 |
tcccgtaacaatctccaagcaaaaatggaaaccttaa |
226 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38295784 |
tcccgtaacaacctccaagcaaaaatggaaactttaa |
38295820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 40513998 - 40513621
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
40513998 |
tcaatattaaggggatcagcacatgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtaggacaatgtagaaataaatgagagacag |
40513899 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||| || | |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513898 |
actctgccatgccacacccggaaacacacaatgctgcctcaccgacgatgataccacgccgaagaaggtgattcttagtcggcaacctatcccgtaacaa |
40513799 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
40513798 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatctggaggttgaacctgaactgtaagttgttga |
40513699 |
T |
|
| Q |
301 |
tagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaacg |
378 |
Q |
| |
|
||| || | ||||||||||||||| |||| | ||||||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
40513698 |
taggcatcgctcaccgtgtaaccgtaatccgtatcggagtcccattgccacctgtcagaaatatcatactgcaaaacg |
40513621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 34829267 - 34829643
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||| ||| | | ||||||||||||| |||||| |||||| | ||||||||| |||| ||||| |||||||| ||||| || |||| ||| |
|
|
| T |
34829267 |
tcaatattaaaggggttaacacctgacattccgatccaagacctgatatgatgccacaatgtactgaaagtggcacaatgaataaacaagtgaggcgcag |
34829366 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
|||| || |||| ||||| |||||||||| || | ||| || |||| | ||||| | ||||| | ||||||| ||| |||||| ||||| ||||| |
|
|
| T |
34829367 |
actcttccttgccgcaccctgtaacacacataactacttcggcattgattactccacgtcttagaagattattcttaatcgacaacctgtcccgcaacaa |
34829466 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttga |
300 |
Q |
| |
|
| ||||||||| ||||| ||||| ||| ||||||| |||||||||||||| ||||| || | | ||| | |||| | | |||||| | ||||||||||| |
|
|
| T |
34829467 |
ccgccaagcaaagatggagaccttcagcagcacctgcttatgccagataagatctcccatagtaccatatggaggatcagcctgagttttcagttgttga |
34829566 |
T |
|
| Q |
301 |
tagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaac |
377 |
Q |
| |
|
|||||||||||||| |||||||| | |||| |||| ||||| |||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
34829567 |
tagacacctctcacagtgtaaccaccatcaaaatcagagtcccattgccacctgtcagaaagatcagactgcaaaac |
34829643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 31921457 - 31921386
Alignment:
| Q |
186 |
cctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
257 |
Q |
| |
|
||||||||||| ||| |||||||| | |||||||||||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
31921457 |
cctatcccgtagcaaactccaagccataatggaaaccttcaaaggaacctgcttatgccagacaaggtctcc |
31921386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 33121435 - 33121362
Alignment:
| Q |
175 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagat |
248 |
Q |
| |
|
||||| ||||| ||||| || | ||| ||||||||||| | ||||||||| | |||||||||| |||||||||| |
|
|
| T |
33121435 |
ttagtaggcaatctatcacgaagcaacctccaagcaaataaggaaaccttcaacggcacctgactatgccagat |
33121362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 35213481 - 35213731
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
35213481 |
tcaatattaaggggatcaacacctgacattccaatccaacacctgacaaaatgccacaaagtaacgaaagtagcacaatgtataaataaatgggaaacag |
35213580 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35213581 |
actctgccatgccgcacccagtaacacacaatgctgcctcgccaacaatgatgccatgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
35213680 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
251 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35213681 |
tcttcaagcaaaaatggaaaccttaagcggcacttgattatgccagataag |
35213731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26855563 - 26855817
Alignment:
| Q |
3 |
aatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagac |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||| || |||||| || ||||||||||| ||||||||| | ||||| ||||| | |||||| || | |
|
|
| T |
26855563 |
aatattaaaagggtcagcacctgacattccgatcaaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaaagatgagatgtagtc |
26855662 |
T |
|
| Q |
103 |
tcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatc |
202 |
Q |
| |
|
|| |||| || ||||| || ||||||| ||||||| |||| |||||||||| | ||| ||||||||||||||||||||||| || || |||| |
|
|
| T |
26855663 |
tcttccataccgcaccctgtgacacacatacaagcctcgctgttgattatgccacgcctaaaaagatgattcttagtcggcaacctatcacgcaataatc |
26855762 |
T |
|
| Q |
203 |
tccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
257 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
26855763 |
gccaagcaaaaatggaaaccttgagcggcacctgcttatgccatataaggtctcc |
26855817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 44433425 - 44433496
Alignment:
| Q |
171 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatg |
242 |
Q |
| |
|
|||||| || || ||||| || || |||||||||||||||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
44433425 |
attcttggttggtaacctgtcacgcaacaatctccaagcaaaaatagacaccttcagcggtacctgattatg |
44433496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 4077297 - 4077367
Alignment:
| Q |
175 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgcca |
245 |
Q |
| |
|
||||| ||||| ||||| || | ||| |||||||||||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
4077297 |
ttagtaggcaatctatcacgaagcaacctccaagcaaaaatagaaaccttcaacggcacctggttatgcca |
4077367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 11196199 - 11196576
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
|||||||||||| | || |||||||||||| |||||| |||||| || ||||||||| | ||||||||| || || || |||||||||||||| || |
|
|
| T |
11196199 |
tcaatattaaggaggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaataaatgagacgcaa |
11196298 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaa |
200 |
Q |
| |
|
||| ||||| || ||||| |||||||||| ||||||||||| |||| |||||||||| ||||| || |||||||||||||||||||| || ||||| |
|
|
| T |
11196299 |
tctctgccataccgcaccctgtaacacacataactgcctcgccattgattatgccacgccttagaagatggttcttagtcggcaacctatctcgcaacaa |
11196398 |
T |
|
| Q |
201 |
tctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgttga |
300 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||| || | | ||||| |||||| | |||||| || || || ||| |
|
|
| T |
11196399 |
tcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccagataagatctcctatagtaacatctggaggttcagcctgagtagtaaggtgatga |
11196498 |
T |
|
| Q |
301 |
tagacacctctcaccgtgtaaccgcaatcagaatcggagtctaattgccacctctcagaaatatcagcctgcaaaacg |
378 |
Q |
| |
|
||||| |||| ||| ||||||| | | ||||||| ||||| |||||||||| |||||||||| | |||||||||| |
|
|
| T |
11196499 |
tagacgcctcccacactgtaaccaccagcagaatcagagtcccattgccacctgtcagaaatattatgctgcaaaacg |
11196576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 32624217 - 32624451
Alignment:
| Q |
16 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagactcagccatgccac |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||| | ||||||||| || ||||| |||||||||||||| || ||| |||| || | |
|
|
| T |
32624217 |
tcagcacctgacattccaatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaataaatgagatgtagtctcttccataccgc |
32624316 |
T |
|
| Q |
116 |
acccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatctccaagcaaaaat |
215 |
Q |
| |
|
| || || ||||||| ||||||||| |||| |||||||||| ||||| || |||||||||||||||||||| | || |||| |||| ||||||| |
|
|
| T |
32624317 |
atcctgtgacacacatacatgcctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacctatctctcaataatcgccaaacaaaaat |
32624416 |
T |
|
| Q |
216 |
ggaaaccttaagcggcacctgattatgccagataa |
250 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
32624417 |
ggaaaccttcagcggcacctgcttatgccatataa |
32624451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 144301 - 144246
Alignment:
| Q |
16 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagt |
71 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||| ||||||||| |
|
|
| T |
144301 |
tcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagt |
144246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 14687285 - 14687044
Alignment:
| Q |
16 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagactcagccatgccac |
115 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||| ||||||||| | ||||| ||||| | |||||| || ||| ||| || | |
|
|
| T |
14687285 |
tcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaaagatgagatgtagtctcttccacaccgc |
14687186 |
T |
|
| Q |
116 |
acccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatctccaagcaaaaat |
215 |
Q |
| |
|
|||| || ||||||| |||| | |||| |||||||||| | ||| ||||||||||||||||||||||| || || |||| |||||||||||| |
|
|
| T |
14687185 |
accctgtgacacacatacaaacctcactgttgattatgccacgcctaaaaagatgattcttagtcggcaacctatcacgcaataatcgccaagcaaaaat |
14687086 |
T |
|
| Q |
216 |
ggaaaccttaagcggcacctgattatgccagataaggtctcc |
257 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
14687085 |
ggaaaccttaagcggcacctgcttatgccatataaggtctcc |
14687044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 26513744 - 26513816
Alignment:
| Q |
173 |
tcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgcca |
245 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
26513744 |
tcttggtcggcaacctatcccgcaacaactgccaagcaaaaatggaaacctttagaggaacctgcttatgcca |
26513816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 21368210 - 21367960
Alignment:
| Q |
1 |
tcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacag |
100 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||| |||||| || ||||||||| | ||||||||| || ||||| ||||| | || ||| || |
|
|
| T |
21368210 |
tcaatattaagagggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaaaagataagatgtag |
21368111 |
T |
|
| Q |
101 |
actcagccatgccacacccagtaacacacaatgc-tgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaaca |
199 |
Q |
| |
|
||| |||| || ||||| || ||||| | | | ||||||||| |||| |||||||||| || || || |||||||||||||||||||| | || | |
|
|
| T |
21368110 |
tctcttccataccgcaccctgtgacaca-attacatgcctcgccgttgattatgccacgccttaggagatggttcttagtcggcaacctatctctcaata |
21368012 |
T |
|
| Q |
200 |
atctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
251 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
21368011 |
atcgccaagaaaaaatggaaaccttcagcggcacctacttatgccatataag |
21367960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 4415818 - 4415745
Alignment:
| Q |
175 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagat |
248 |
Q |
| |
|
||||| ||||| ||||| || | ||| ||||||||||| | |||||||| | ||||||||||||||||||||| |
|
|
| T |
4415818 |
ttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgattatgccagat |
4415745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 6245145 - 6245307
Alignment:
| Q |
171 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatct |
270 |
Q |
| |
|
|||||||||| |||||||||| || | ||||| ||||||||| || |||||||| || |||||||| |||||||| ||||| ||||| | | | ||||| |
|
|
| T |
6245145 |
attcttagtcagcaacctatctcgcatcaatcgccaagcaaagatagaaacctttagtggcacctgcttatgccaaataagatctcccgtagtaacatct |
6245244 |
T |
|
| Q |
271 |
agaggttgaacctgagctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaa |
333 |
Q |
| |
|
|||| | |||| ||||||||||| ||||||||||||||| |||||||| | ||||||| |
|
|
| T |
6245245 |
tgaggaacagcctgcattgtcagttgttcatagacacctctcacagtgtaaccaccatcagaa |
6245307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 171 - 333
Target Start/End: Original strand, 9510800 - 9510962
Alignment:
| Q |
171 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatct |
270 |
Q |
| |
|
||||||||||| |||||| || || ||||| | |||||||| || |||||||| | ||||||||| |||||||||||||| ||||| | | | ||||| |
|
|
| T |
9510800 |
attcttagtcgacaacctgtctcgcaacaaccgtcaagcaaagatagaaacctttaacggcacctgcttatgccagataagatctcccgtagtaacatct |
9510899 |
T |
|
| Q |
271 |
agaggttgaacctgagctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaa |
333 |
Q |
| |
|
|||| | | | || | ||||||||||| ||||||||||||||| |||||||| | ||||||| |
|
|
| T |
9510900 |
tgaggatcagcttgcgttgtcagttgttcatagacacctctcacagtgtaaccaccatcagaa |
9510962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 3939248 - 3939319
Alignment:
| Q |
186 |
cctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
257 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
3939248 |
cctatcccgtaacaaatgccaagcaagaatggaaaccttcaaaggaacctgcttatgccagacaaggtctcc |
3939319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 15439189 - 15439266
Alignment:
| Q |
174 |
cttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
251 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||| | || ||||| |||||||| ||||| |
|
|
| T |
15439189 |
cttagttggcagcctgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataag |
15439266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 15530493 - 15530570
Alignment:
| Q |
174 |
cttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
251 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||| | || ||||| |||||||| ||||| |
|
|
| T |
15530493 |
cttagttggcagcctgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataag |
15530570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University