View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_65 (Length: 376)
Name: NF6876A_low_65
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 29013398 - 29013767
Alignment:
| Q |
1 |
taccagatttcttcttccttaactgatagcttccaactacttcactcccttgccttaaaccctcatcattcagcaaccctttagcaagaaactctttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013398 |
taccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaaccctttagcaagaaactctttgag |
29013497 |
T |
|
| Q |
101 |
aagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013498 |
aagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagag |
29013597 |
T |
|
| Q |
201 |
ttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaa |
300 |
Q |
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| T |
29013598 |
ttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaa |
29013697 |
T |
|
| Q |
301 |
tagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29013698 |
tagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
29013767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 29366086 - 29366455
Alignment:
| Q |
1 |
taccagatttcttcttccttaactgatagcttccaactacttcactcccttgccttaaaccctcatcattcagcaaccctttagcaagaaactctttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366086 |
taccagatttcttcttccttaactgatagcttccaacttcttcactcccttgccttaaaccctcatcattcagcaaccctttagcaagaaactctttgag |
29366185 |
T |
|
| Q |
101 |
aagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366186 |
aagaacagtagctgatccatgaagtttctctgtaaagaaaaaagggtctctgctataaacttcaacattcaatgcaagatcatgaaaatttggatcagag |
29366285 |
T |
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| Q |
201 |
ttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29366286 |
ttatcaacttgaatggaaaactttgttctccaaagagggtttgtgttggttgaagcatcaactttggttatgtatttgttggttggatcaacccaaccaa |
29366385 |
T |
|
| Q |
301 |
tagcataccattgacgtttccatagtgaatgtgatgctcttactccacgagctgatattatgcatatttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
29366386 |
tagcataccattgacgtttccatagtgaatgtgatgctcttactcctcgagctgatattaagcatatttc |
29366455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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