View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_67 (Length: 373)
Name: NF6876A_low_67
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 353
Target Start/End: Complemental strand, 35496594 - 35496263
Alignment:
| Q |
20 |
atcacatatataaacaattagtagtgccgttgcatcatcctattgaacttgtacaagtattttattgaattttatcgggttaatatagctcagtctaata |
119 |
Q |
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| T |
35496594 |
atcacatatataaacaattattagtgccgttgcatcatcctattgaacttgtacaagtactttattgaattttatcaggttaatatagctcagtctaata |
35496495 |
T |
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| Q |
120 |
ttagggtcggataagatataaacaaccttacctaattcgtcttccgtacgtcattacttcatctaacaaagatgaattggtaccgattatattctacctt |
219 |
Q |
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| T |
35496494 |
ttagggtcggataagatataaataactttacctaattcgtctttcgtacgtcgttacttcatccaacgaaaatgaattggtaccgattatattctacctt |
35496395 |
T |
|
| Q |
220 |
aaatatgttaggtttacnnnnnnnnnnaatatatgttaggtttagtgatgagaacacaactatgtttatctcactccnnnnnnngtttggatggaattta |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35496394 |
aaatatgttaggtttac--tttttattaatatatgttaggtttagtgatgagaacacaactatgtttatctcactcctttttttgtttggatggaattta |
35496297 |
T |
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| Q |
320 |
tctcactcccatagctagtagttagcaattttat |
353 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
35496296 |
tctcactcccatagctagtagttagcacttttat |
35496263 |
T |
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