View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_71 (Length: 366)
Name: NF6876A_low_71
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_71 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 27 - 366
Target Start/End: Complemental strand, 5678635 - 5678293
Alignment:
| Q |
27 |
aggtccttgagcctatactataactgactcattaatctttttctgcttcatttatagtgaggtagaaatctttctgtacttgccatgc-ggatcgtggtc |
125 |
Q |
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| T |
5678635 |
aggtccttgagcctatactataactgactcattaatctttttctgcttcatttatagtgaggtagaaatctttctgtacttgccatggtggatcgtggtc |
5678536 |
T |
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| Q |
126 |
tagacaaaactacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtata--nnnnnnna |
223 |
Q |
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| T |
5678535 |
tagacaaaactacaacatctgctagtgacttgtctgtgaagaagcaagagcttctatctagtgccatgaaaagaacaagtgactggtatattttttttta |
5678436 |
T |
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| Q |
224 |
tgtttatgtatgtatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttg |
323 |
Q |
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| T |
5678435 |
tgtttatgtatatatatgtcaaatgtacttgacacttttcttgtgcatgttcttgtttgctaacttttgttggattttagtaactgaaaccaatgagttg |
5678336 |
T |
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| Q |
324 |
tattgcttaattataggattttttctcaggagattccaagtga |
366 |
Q |
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| T |
5678335 |
tattgcttaattataggattttttctcaggagattccaagtga |
5678293 |
T |
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