View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_72 (Length: 365)
Name: NF6876A_low_72
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_72 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 154 - 340
Target Start/End: Complemental strand, 35176355 - 35176169
Alignment:
| Q |
154 |
agaaaagactaacattgttcgatggttttgatgctgtaaaattaatttgtagattgggcaactagatttgatgcagtaaaattaatttgtaaattaggca |
253 |
Q |
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| T |
35176355 |
agaaaagactaacattgttcaatggttttgatgctgtaaaattaatttgtagattgggcaactagatttgatgctgtaaaattaatttgtaaattaggca |
35176256 |
T |
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| Q |
254 |
attccagttgttaaactcttacacctggatagatgcttccttcccttttgactttagctatacattaatcgagaaatgtgtttcttt |
340 |
Q |
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| T |
35176255 |
actccagttgttaaactcttacacctggatagatgcttccttcccttttgactttagctatacattaatcgagaaatgtgtttcttt |
35176169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 35176463 - 35176339
Alignment:
| Q |
9 |
tggacatcaattagtggtccacaaatgcttgaaccacatcgagtttgtaacttaataatcaaatggacgctgaaaatggaatcagaagactttaacattt |
108 |
Q |
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| T |
35176463 |
tggacatcaattagtggtccacaaatgcttgaaccacatcgagtttgtaacttaataatcaaatggacgctgaaaatggaatcagaagac-ttaacatta |
35176365 |
T |
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| Q |
109 |
tttttagggagaaaagactaacattg |
134 |
Q |
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| T |
35176364 |
tttttagggagaaaagactaacattg |
35176339 |
T |
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