View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_73 (Length: 365)

Name: NF6876A_low_73
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_73
NF6876A_low_73
[»] chr1 (3 HSPs)
chr1 (13-282)||(47782846-47783117)
chr1 (142-269)||(3838361-3838487)
chr1 (242-282)||(34159286-34159326)
[»] chr2 (4 HSPs)
chr2 (158-284)||(6909350-6909476)
chr2 (228-269)||(2593315-2593356)
chr2 (242-270)||(4774970-4774998)
chr2 (242-282)||(24967710-24967750)
[»] chr8 (7 HSPs)
chr8 (158-282)||(19263605-19263727)
chr8 (229-282)||(12156249-12156302)
chr8 (242-281)||(30370014-30370053)
chr8 (244-281)||(757764-757801)
chr8 (241-270)||(16250310-16250339)
chr8 (242-282)||(16313875-16313915)
chr8 (242-270)||(37251437-37251465)
[»] chr3 (7 HSPs)
chr3 (158-282)||(50066-50188)
chr3 (147-269)||(44904600-44904721)
chr3 (14-280)||(34326308-34326575)
chr3 (195-284)||(10976763-10976851)
chr3 (152-221)||(27879612-27879681)
chr3 (229-269)||(17763842-17763882)
chr3 (229-269)||(19065162-19065202)
[»] scaffold1743 (2 HSPs)
scaffold1743 (175-281)||(506-610)
scaffold1743 (86-144)||(432-490)
[»] chr5 (3 HSPs)
chr5 (242-282)||(8128705-8128745)
chr5 (242-270)||(7928361-7928389)
chr5 (242-270)||(29866146-29866174)
[»] chr4 (3 HSPs)
chr4 (242-282)||(26290270-26290310)
chr4 (242-284)||(42757968-42758010)
chr4 (242-282)||(13228352-13228392)
[»] chr7 (1 HSPs)
chr7 (205-269)||(29502481-29502544)
[»] scaffold0268 (1 HSPs)
scaffold0268 (242-270)||(20135-20163)
[»] scaffold0131 (1 HSPs)
scaffold0131 (242-282)||(17316-17356)
[»] scaffold0119 (1 HSPs)
scaffold0119 (242-270)||(40366-40394)
[»] chr6 (3 HSPs)
chr6 (242-270)||(4791915-4791943)
chr6 (242-270)||(20872255-20872283)
chr6 (242-270)||(23410313-23410341)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 47783117 - 47782846
Alignment:
Q  13 catcatcaaccaatgtcacttctccacaaagttgaaatgggttacgatacaaacgtaggactttctaagtga--gtcaatattggagtgggtcaactcat 110  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  47783117 catcattaaccaatgtcacttctccacaaagttgaaacgggttacgatacaaacgtaggactttctaagtgatcgtcaatattggtgtgggtcaactcat 47783018  T
Q  111 tgtacaaagagcaactaaataagtgcaagagttttctcacctatttgttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgata 210  Q
    ||||||||||||||| | | || |||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||| |||||| ||||||||||    
T  47783017 tgtacaaagagcaaccacacaaatgcaagagttttttcacctatttgttgttcaacttcaactcttatattcaatgttagaccgtaactgacacttgata 47782918  T
Q  211 aatcacaatatatttcaccctcaagtatggagaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||||||||| || || |||||||||||||||| |||||||||||||||| |||||||||||||||    
T  47782917 aatcacaatatatttcgccttcgagtatggagaaattcttgcccgtgcttggcacgagttcacatactagtt 47782846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 142 - 269
Target Start/End: Original strand, 3838361 - 3838487
Alignment:
Q  142 ttttctcacctatttgttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatgga 241  Q
    |||| |||| ||| ||||||||||| || | ||||||  ||||||||||||| ||||| | | |||||| |||||||||| | ||  |||| | |||| |    
T  3838361 ttttttcacttatatgttgttcaaccttcaatcttctactcaatgttagactataacttatatttgatatatcacaatat-tatcttcctctaatatgaa 3838459  T
Q  242 gaaattctagcccgtgcttggcacgggt 269  Q
    ||||||||||||||||||||||||||||    
T  3838460 gaaattctagcccgtgcttggcacgggt 3838487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 34159326 - 34159286
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||||||||||||| ||||||||  ||||||||||    
T  34159326 gaaattctagcccgtgcttgacacgggtttgcatactagtt 34159286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 158 - 284
Target Start/End: Complemental strand, 6909476 - 6909350
Alignment:
Q  158 ttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatggagaaattctagcccgtg 257  Q
    |||||||||||  | | |||| ||||||||||||| |||||| |||||||||||||||||| |||||    ||||||||||||||||||||||| ||||     
T  6909476 ttgttcaacttccattgttctattcaatgttagaccgtaactgacacttgataaatcacaacatattctcgcctcaagtatggagaaattctagtccgta 6909377  T
Q  258 cttggcacgggttcacatactagttgt 284  Q
    |||||||||||| || |||||||||||    
T  6909376 cttggcacgggtccaaatactagttgt 6909350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 2593315 - 2593356
Alignment:
Q  228 ccctcaagtatggagaaattctagcccgtgcttggcacgggt 269  Q
    |||||||||||   ||||||||||||||||||||||||||||    
T  2593315 ccctcaagtatatggaaattctagcccgtgcttggcacgggt 2593356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 4774970 - 4774998
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  4774970 gaaattctagcccgtgcttggcacgggtt 4774998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 24967750 - 24967710
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  24967750 gaaagtctagcccgtgcttggcacgggttttcatactagtt 24967710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 19263605 - 19263727
Alignment:
Q  158 ttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatggagaaattctagcccgtg 257  Q
    |||||||||||  | | |||| |||||||||||||  ||||  |||||||||||||||||| ||||| | |   |||||||||| |||||||||||||||    
T  19263605 ttgttcaacttccattgttctattcaatgttagaccataaccgacacttgataaatcacaa-atatt-ctcgtccaagtatggataaattctagcccgtg 19263702  T
Q  258 cttggcacgggttcacatactagtt 282  Q
    |||||||||||| ||||||||||||    
T  19263703 cttggcacgggtccacatactagtt 19263727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 12156302 - 12156249
Alignment:
Q  229 cctcaagtatggagaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  12156302 cctcaagtatcgagaagttctagcccgtgcttggcacgggtccacatactagtt 12156249  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 30370014 - 30370053
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagt 281  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  30370014 gaaattctagcccgtgcttggcacgggtttgcatactagt 30370053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 757801 - 757764
Alignment:
Q  244 aattctagcccgtgcttggcacgggttcacatactagt 281  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  757801 aattatagcccgtgcttggcacgggtccacatactagt 757764  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 16250310 - 16250339
Alignment:
Q  241 agaaattctagcccgtgcttggcacgggtt 270  Q
    ||||||||||||||||||||||||||||||    
T  16250310 agaaattctagcccgtgcttggcacgggtt 16250339  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 16313875 - 16313915
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    ||||||||||||||||||| |||||||||  ||||||||||    
T  16313875 gaaattctagcccgtgcttagcacgggtttccatactagtt 16313915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 37251437 - 37251465
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  37251437 gaaattctagcccgtgcttggcacgggtt 37251465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 158 - 282
Target Start/End: Complemental strand, 50188 - 50066
Alignment:
Q  158 ttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatggagaaattctagcccgtg 257  Q
    |||||||||||  | | |||| || ||||||||||  ||||  |||||||||||||||||| ||||| | | | |||||||||| |||||||||||||||    
T  50188 ttgttcaacttccattgttctatttaatgttagaccataaccgacacttgataaatcacaa-atatt-ctcgcccaagtatggataaattctagcccgtg 50091  T
Q  258 cttggcacgggttcacatactagtt 282  Q
    |||||||||||| ||||||||||||    
T  50090 cttggcacgggtccacatactagtt 50066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 269
Target Start/End: Complemental strand, 44904721 - 44904600
Alignment:
Q  147 tcacctatttgttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatggagaaat 246  Q
    |||| ||| ||||||||||| || | ||||||  ||||||||| ||| ||||| | | |||||| ||||||| || | ||  |||||| |||| ||||||    
T  44904721 tcacttatatgttgttcaaccttcaatcttctactcaatgttaaactataacttatatttgatacatcacaacat-tatcttcctcaaatatgtagaaat 44904623  T
Q  247 tctagcccgtgcttggcacgggt 269  Q
    |||||||||||||||||||||||    
T  44904622 tctagcccgtgcttggcacgggt 44904600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 34326575 - 34326308
Alignment:
Q  14 atcatcaaccaatgtcacttctccacaaagttgaaatgggttacgatacaaacgtaggactttctaagtgagtcaatattggagtgggtcaactcattgt 113  Q
    ||||| |||||||| ||| |  |||||||||||||   ||||| ||||| | |||  ||| ||||||   |||||| ||||  ||||||| |||| |||     
T  34326575 atcatgaaccaatgccaccttcccacaaagttgaatcaggttatgataccaccgtcagaccttctaaagaagtcaacattgatgtgggtcgactcgttgg 34326476  T
Q  114 acaaagagcaactaaataagtgcaagagttttctcacctatttgttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaat 213  Q
    |||||||| ||| | | ||  | |||||||||| ||  ||| |||| ||| ||||| | | |||| ||||||||||||| ||||   |||||||||||||    
T  34326475 acaaagagtaaccacacaaacgtaagagttttcgcatttatatgttattcgactttcaatgttctattcaatgttagaccgtaatctacacttgataaat 34326376  T
Q  214 cacaatatatt-tcaccctcaagtatggagaaattctagcccgtgcttggcacgggttcacatactag 280  Q
    ||||| ||||| |  | |||||||||| |||||||||| | ||| |||| || | || ||||||||||    
T  34326375 cacaacatattattgctctcaagtatgaagaaattctaactcgtacttgacatgagtccacatactag 34326308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 10976763 - 10976851
Alignment:
Q  195 taactaacacttgataaatcacaatatatttcaccctcaagtatggagaaattctagcccgtgcttggcacgggttcacatactagttgt 284  Q
    ||||||| |||||| | |||||||||| | || ||||||| ||||  ||||||||||||||| ||||||| ||||   ||||||||||||    
T  10976763 taactaatacttgaaacatcacaatat-tctctccctcaaatatgacgaaattctagcccgtacttggcatgggtgtccatactagttgt 10976851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 27879681 - 27879612
Alignment:
Q  152 tatttgttgttcaactttaactcttcttttcaatgttagactgtaactaacacttgataaatcacaatat 221  Q
    ||||||||||||||| |  |||||| | || ||||||||||| ||||  |||||||||| ||||||||||    
T  27879681 tatttgttgttcaacctccactcttttatttaatgttagactttaaccgacacttgatacatcacaatat 27879612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 17763882 - 17763842
Alignment:
Q  229 cctcaagtatggagaaattctagcccgtgcttggcacgggt 269  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  17763882 cctcaaatatgacgaaattctagcccgtgcttggcacgggt 17763842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 19065202 - 19065162
Alignment:
Q  229 cctcaagtatggagaaattctagcccgtgcttggcacgggt 269  Q
    |||||| ||||  ||||||||||||||||||||||||||||    
T  19065202 cctcaaatatgacgaaattctagcccgtgcttggcacgggt 19065162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 506 - 610
Alignment:
Q  175 ttcttttcaatgttagactgtaactaacacttgataaatcacaatatatttcaccctcaagtatggagaaattctagcccgtgcttggcacgggttcaca 274  Q
    |||| |||||||||||||  ||||  |||||||||||||||||| ||||| | | | ||| |||||| ||||||||||||||||||||||||||| ||||    
T  506 ttctattcaatgttagaccataaccgacacttgataaatcacaa-atatt-ctcgcccaaatatggataaattctagcccgtgcttggcacgggtccaca 603  T
Q  275 tactagt 281  Q
    |||||||    
T  604 tactagt 610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 432 - 490
Alignment:
Q  86 tcaatattggagtgggtcaactcattgtacaaagagcaactaaataagtgcaagagttt 144  Q
    |||| ||||| ||||||| |||||||| |||||||||||| ||| ||||| ||||||||    
T  432 tcaacattggtgtgggtcgactcattggacaaagagcaaccaaaaaagtgtaagagttt 490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 8128705 - 8128745
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  8128705 gaaattctagcccgtgcttggcacgggtttgcatactagtt 8128745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 7928389 - 7928361
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  7928389 gaaattctagcccgtgcttggcacgggtt 7928361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 29866146 - 29866174
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  29866146 gaaattctagcccgtgcttggcacgggtt 29866174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 26290270 - 26290310
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  26290270 gaaattctagcccgtgcttggcacgggtttgcatactagtt 26290310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 42757968 - 42758010
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagttgt 284  Q
    ||||||||||||||||||||||||||||   ||||||||||||    
T  42757968 gaaattctagcccgtgcttggcacgggtgtccatactagttgt 42758010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 13228392 - 13228352
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    ||||||||||||||||||||||||||||   ||||||||||    
T  13228392 gaaattctagcccgtgcttggcacgggtgtccatactagtt 13228352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 29502481 - 29502544
Alignment:
Q  205 ttgataaatcacaatat-atttcaccctcaagtatggagaaattctagcccgtgcttggcacgggt 269  Q
    |||||| |||||||||| |||||  ||| |||||||  ||||||||||||||||||||||||||||    
T  29502481 ttgatacatcacaatatcatttc--ccttaagtatgacgaaattctagcccgtgcttggcacgggt 29502544  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 20135 - 20163
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  20135 gaaattctagcccgtgcttggcacgggtt 20163  T

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Target: scaffold0131 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 17356 - 17316
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggttcacatactagtt 282  Q
    |||||||||||||||| ||||||||||| |||| |||||||    
T  17356 gaaattctagcccgtgtttggcacgggtccacacactagtt 17316  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 40394 - 40366
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  40394 gaaattctagcccgtgcttggcacgggtt 40366  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 4791915 - 4791943
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  4791915 gaaattctagcccgtgcttggcacgggtt 4791943  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 20872283 - 20872255
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  20872283 gaaattctagcccgtgcttggcacgggtt 20872255  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 23410313 - 23410341
Alignment:
Q  242 gaaattctagcccgtgcttggcacgggtt 270  Q
    |||||||||||||||||||||||||||||    
T  23410313 gaaattctagcccgtgcttggcacgggtt 23410341  T

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