View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_76 (Length: 362)

Name: NF6876A_low_76
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_76
NF6876A_low_76
[»] chr2 (14 HSPs)
chr2 (11-228)||(16551748-16551963)
chr2 (306-362)||(16551614-16551670)
chr2 (107-217)||(5452367-5452475)
chr2 (96-198)||(41809183-41809285)
chr2 (96-163)||(1647266-1647333)
chr2 (96-171)||(11063518-11063593)
chr2 (134-228)||(16552465-16552558)
chr2 (131-197)||(29430823-29430889)
chr2 (96-153)||(28677642-28677699)
chr2 (96-165)||(41817198-41817267)
chr2 (96-157)||(43065429-43065490)
chr2 (131-183)||(5902502-5902554)
chr2 (134-218)||(8017502-8017585)
chr2 (129-218)||(40837356-40837440)
[»] chr3 (12 HSPs)
chr3 (96-199)||(43115086-43115189)
chr3 (94-158)||(11039317-11039381)
chr3 (52-96)||(34318012-34318056)
chr3 (122-218)||(45541627-45541722)
chr3 (95-170)||(26330289-26330364)
chr3 (96-183)||(42745068-42745155)
chr3 (101-187)||(27290850-27290936)
chr3 (50-92)||(27291005-27291047)
chr3 (96-197)||(27792902-27793003)
chr3 (98-183)||(37273166-37273251)
chr3 (131-219)||(40880866-40880953)
chr3 (46-94)||(41028955-41029003)
[»] chr1 (19 HSPs)
chr1 (96-218)||(37241740-37241862)
chr1 (132-194)||(14559038-14559100)
chr1 (96-163)||(11639389-11639456)
chr1 (98-153)||(31118075-31118130)
chr1 (161-220)||(48748512-48748570)
chr1 (52-94)||(4202233-4202275)
chr1 (131-197)||(4757403-4757469)
chr1 (101-183)||(17420238-17420320)
chr1 (96-198)||(44422729-44422831)
chr1 (130-216)||(51929383-51929468)
chr1 (96-197)||(3110021-3110122)
chr1 (13-46)||(29665912-29665945)
chr1 (96-201)||(38170625-38170730)
chr1 (22-94)||(45999392-45999467)
chr1 (96-180)||(6262050-6262134)
chr1 (118-218)||(17269302-17269401)
chr1 (148-216)||(28467230-28467297)
chr1 (131-218)||(34536223-34536309)
chr1 (161-197)||(35017677-35017713)
[»] chr8 (11 HSPs)
chr8 (131-212)||(39881646-39881726)
chr8 (96-194)||(6950352-6950450)
chr8 (105-197)||(11569396-11569488)
chr8 (99-183)||(14949899-14949983)
chr8 (21-96)||(8629002-8629077)
chr8 (131-217)||(4560567-4560652)
chr8 (99-194)||(30191083-30191178)
chr8 (96-202)||(13000358-13000464)
chr8 (96-197)||(7918385-7918486)
chr8 (96-153)||(10383915-10383972)
chr8 (96-157)||(30918143-30918203)
[»] chr4 (13 HSPs)
chr4 (96-181)||(1137742-1137827)
chr4 (96-195)||(28232575-28232674)
chr4 (99-197)||(3176043-3176141)
chr4 (134-197)||(18628492-18628555)
chr4 (96-197)||(33534108-33534209)
chr4 (118-218)||(28615387-28615485)
chr4 (105-179)||(27721756-27721830)
chr4 (52-93)||(4663801-4663842)
chr4 (96-197)||(21157798-21157899)
chr4 (96-180)||(19394719-19394803)
chr4 (17-45)||(23525731-23525759)
chr4 (147-183)||(29778884-29778920)
chr4 (144-228)||(54575512-54575595)
[»] chr6 (15 HSPs)
chr6 (96-219)||(8420114-8420237)
chr6 (131-197)||(2455875-2455941)
chr6 (96-218)||(30863276-30863397)
chr6 (94-218)||(32171302-32171425)
chr6 (96-163)||(7931699-7931766)
chr6 (100-219)||(32577903-32578022)
chr6 (99-197)||(34939777-34939875)
chr6 (122-193)||(769194-769265)
chr6 (122-201)||(8147001-8147080)
chr6 (96-159)||(31420975-31421038)
chr6 (96-158)||(9027608-9027670)
chr6 (150-194)||(4331014-4331058)
chr6 (96-140)||(6536977-6537021)
chr6 (122-194)||(27857414-27857486)
chr6 (96-215)||(33558467-33558585)
[»] chr5 (15 HSPs)
chr5 (122-197)||(11457154-11457229)
chr5 (98-197)||(38728434-38728533)
chr5 (120-177)||(2568712-2568769)
chr5 (96-191)||(6109513-6109608)
chr5 (131-194)||(7856605-7856667)
chr5 (23-93)||(40499780-40499848)
chr5 (105-179)||(13264062-13264136)
chr5 (96-170)||(35095752-35095826)
chr5 (131-180)||(3977373-3977422)
chr5 (120-201)||(11095430-11095511)
chr5 (96-165)||(35963271-35963340)
chr5 (99-183)||(1899187-1899270)
chr5 (96-176)||(37611175-37611255)
chr5 (96-176)||(37787905-37787985)
chr5 (10-46)||(38149406-38149442)
[»] chr7 (8 HSPs)
chr7 (99-197)||(33894660-33894758)
chr7 (96-210)||(34754737-34754850)
chr7 (106-190)||(39566153-39566237)
chr7 (96-183)||(20553133-20553220)
chr7 (104-195)||(36598297-36598388)
chr7 (96-146)||(26935547-26935597)
chr7 (21-94)||(991964-992036)
chr7 (96-157)||(46082066-46082127)
[»] scaffold0590 (1 HSPs)
scaffold0590 (144-218)||(996-1069)
[»] scaffold0275 (1 HSPs)
scaffold0275 (144-218)||(2906-2979)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 16551963 - 16551748
Alignment:
Q  11 caatatggccttgtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtataaggtatttctataacaaaatagcttatggaaataa 110  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  16551963 caatatggccttgtttggataaacatcttaattaaa--tggttatcgtataagtgctcaattataaggtgtttctataacaaaatagcttatggaaataa 16551866  T
Q  111 gctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaa 210  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16551865 gctgaatacaacttatgtatatgtcataagatctttccataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaa 16551766  T
Q  211 tccaaacatagcctaagt 228  Q
    |||||||||| |||||||    
T  16551765 tccaaacataacctaagt 16551748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 16551670 - 16551614
Alignment:
Q  306 tacttcaatagatcacaactaaatgcaataaaaccagaacattcagcaccatcaact 362  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  16551670 tacttcaataaatcagaactaaatgcaataaaaccagaacattcagcaccatcaact 16551614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 217
Target Start/End: Original strand, 5452367 - 5452475
Alignment:
Q  107 ataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaag 206  Q
    |||||||| ||||| |||||||| |||||||||| | |||  |||| |||||| ||||| |||| ||||||  |||||||||||||||| |||||| |||    
T  5452367 ataagctgaatacagcttatgtacatgtcataagttttttctataatctcttccaaacagtctc-caagtgaatatgtcaatagataag-ttaaaataag 5452464  T
Q  207 tcaatccaaac 217  Q
    |||||||||||    
T  5452465 tcaatccaaac 5452475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 41809285 - 41809183
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||||||||||  | |||||||||| | |||||||||| | ||| || ||||||||  || || |||| |||||||||||| ||| | |||||    
T  41809285 agcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgtttatgccaacaaataag 41809186  T
Q  196 ctt 198  Q
    |||    
T  41809185 ctt 41809183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 1647266 - 1647333
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaa 163  Q
    ||||||||||||||||||| | ||| ||||||   |||||||||| | |||||||||| |||||||||    
T  1647266 agcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttcttctaaa 1647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 11063518 - 11063593
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcg 171  Q
    |||||||| |||||||||  | |||||||||| | ||||||||| || ||| |||||||||||| ||||| |||||    
T  11063518 agcttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaacagtctcg 11063593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 16552558 - 16552465
Alignment:
Q  134 tcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaacatagcctaagt 228  Q
    |||||||||||||||||||| |||   |||||||||| |||||||||||   | |||||||||| || | ||||||||| ||||| | |||||||    
T  16552558 tcataagatcttttcataagatctaacaaacaatctcacaagtgtttataagagtagataagctcaaga-aagtcaatcaaaacagaccctaagt 16552465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 29430823 - 29430889
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||| | |||||||||| ||||| ||| | || | ||||||||||||||| ||||||||||    
T  29430823 atgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagct 29430889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 28677699 - 28677642
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataag 153  Q
    ||||||||||||||||| | | |||||||||| | |||||||||| | ||||||||||    
T  28677699 agcttatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataag 28677642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 41817198 - 41817267
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaaca 165  Q
    ||||||||||||||||||| | |||| ||||  | |||||||||||| |||||||||  ||| |||||||    
T  41817198 agcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaattctcctaaaca 41817267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 43065490 - 43065429
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctct 157  Q
    ||||||| ||||||||||| | |||| ||||| | |||||||||| | ||||||||||||||    
T  43065490 agcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctct 43065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 5902554 - 5902502
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    |||||||||| | |||||||||| ||||| ||||| |||| ||||||||||||    
T  5902554 atgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 8017502 - 8017585
Alignment:
Q  134 tcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    ||||||| | |||||||||| ||| | ||| |||| | |||||| |||||||||||||||| | | ||| |||||||||||||||    
T  8017502 tcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataa-cctcaaataagtcaatccaaaca 8017585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 40837440 - 40837356
Alignment:
Q  129 atatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    |||||||||||||| ||||||||| |||| | ||||| ||||    |||||||||||| ||||||||| | ||| ||| |||||||||||    
T  40837440 atatgtcataagatgttttcataaactctcccaaacagtctc----gtgtttatgtcagtagataagc-tcaaataagccaatccaaaca 40837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 43115086 - 43115189
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||||||||||| | |||| ||||| | |||||||||| | ||| ||||| |||||| |||||||||| |||||| ||||||||||||||||     
T  43115086 agcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataac 43115185  T
Q  196 ctta 199  Q
    ||||    
T  43115186 ctta 43115189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 11039381 - 11039317
Alignment:
Q  94 atagcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctctt 158  Q
    |||||||||||| |||||||| | |||||||||| | ||||||||| || ||| |||||||||||    
T  11039381 atagcttatggagataagctgaaaacaacttatggacatgtcataatatgtttccataagctctt 11039317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 34318012 - 34318056
Alignment:
Q  52 ttatcgtataagtgctcaagtataaggtatttctataacaaaata 96  Q
    |||| |||| |||||||||||||||| ||||||||||||||||||    
T  34318012 ttatggtatcagtgctcaagtataagctatttctataacaaaata 34318056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 218
Target Start/End: Original strand, 45541627 - 45541722
Alignment:
Q  122 cttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    |||||| | |||||||||| | |||||||||| ||||||||||| |||  |||||||||||  || || |||||| | ||| |||||||||||||||    
T  45541627 cttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttataccattaaataagc-tcaaataagtcaatccaaaca 45541722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 26330364 - 26330289
Alignment:
Q  95 tagcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctc 170  Q
    |||||||||||||||| ||| | | ||| |||| | |||||| ||| | |||||||||||||||||||||| ||||    
T  26330364 tagcttatggaaataacctgaaaagaacctatgaacatgtcagaagttgttttcataagctcttctaaacagtctc 26330289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 42745068 - 42745155
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    |||||||||||||||| || | |||||||||| | |||||||||| | ||| |||||  ||||||||| ||| || |||||| |||||    
T  42745068 agcttatggaaataagatgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaagtgcttatg 42745155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 187
Target Start/End: Complemental strand, 27290936 - 27290850
Alignment:
Q  101 atggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaa 187  Q
    |||||||||||||| | ||| ||||||   |||||||||| | |||||||||||||||| |||||  ||| ||| |||| |||||||    
T  27290936 atggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctcttcgaaacagcctcacaattgttgatgtcaa 27290850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 27291047 - 27291005
Alignment:
Q  50 ggttatcgtataagtgctcaagtataaggtatttctataacaa 92  Q
    ||||||| |||||||||| | ||||||||||||||||||||||    
T  27291047 ggttatcatataagtgcttaggtataaggtatttctataacaa 27291005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 27792902 - 27793003
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||| ||||||||||| | |||||||||  || ||||| ||| | ||| ||||| ||||   ||||| |||| |  |||||||||||||||||||||    
T  27792902 agcttatagaaataagctgaaaacaacttataaatttgtcaaaagctatttccataaactctatcaaacagtctcacgtgtgtttatgtcaatagataag 27793001  T
Q  196 ct 197  Q
    ||    
T  27793002 ct 27793003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 37273166 - 37273251
Alignment:
Q  98 cttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    |||||||||||||| || | |||||||||| | |||||||||| | ||| |||||||||| | ||||| |||| | |||| |||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatg 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 40880953 - 40880866
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaacat 219  Q
    |||||||||| | ||||||||||||||   ||||| |||| |   |||| || ||||||||||||||| ||| ||||||||||||||||    
T  40880953 atgtcataagttgttttcataagctctctcaaacagtctcacgtatgttcatttcaatagataagctt-aaataagtcaatccaaacat 40880866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 41029003 - 41028955
Alignment:
Q  46 aaatggttatcgtataagtgctcaagtataaggtatttctataacaaaa 94  Q
    ||||| ||||| |||||||||| | ||||||| ||||||||||||||||    
T  41029003 aaatgcttatcatataagtgcttatgtataagctatttctataacaaaa 41028955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 37241862 - 37241740
Alignment:
Q  96 agcttatggaaataagctggatacaa-cttatgtatatgtcataagatctttt-cataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 193  Q
    |||||||| |||||||||||| | || |||||| |||| ||||||| | |||| |||| ||||| ||||||||||||||||||| ||||| || ||||||    
T  37241862 agcttatgaaaataagctggaaaaaaacttatgaatatatcataagttgttttgcatatgctctcctaaacaatctcgcaagtgcttatg-cagtagata 37241764  T
Q  194 agcttaaaacaagtcaatccaaaca 218  Q
    ||||| ||| |||||||||||||||    
T  37241763 agctt-aaataagtcaatccaaaca 37241740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 14559038 - 14559100
Alignment:
Q  132 tgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    ||||||||| |||||  || |||||| |||||||||||||||| ||||||||||| |||||||    
T  14559038 tgtcataagctctttctattagctctcctaaacaatctcgcaaatgtttatgtcagtagataa 14559100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 11639456 - 11639389
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaa 163  Q
    |||||||| |||||||||  | ||| |||||| | |||||||||| | ||||||||||||||||||||    
T  11639456 agcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctcttctaaa 11639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 31118075 - 31118130
Alignment:
Q  98 cttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataag 153  Q
    ||||||||||||||||| | |||||| ||| | |||||||||||| ||||||||||    
T  31118075 cttatggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataag 31118130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 48748570 - 48748512
Alignment:
Q  161 aaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaacata 220  Q
    |||||||||| ||||||||||||||||| ||||||| | ||| |||||||| ||||||||    
T  48748570 aaacaatctcacaagtgtttatgtcaatggataagc-tcaaataagtcaattcaaacata 48748512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 4202275 - 4202233
Alignment:
Q  52 ttatcgtataagtgctcaagtataaggtatttctataacaaaa 94  Q
    ||||| |||||||||| ||||||||| ||||||||||||||||    
T  4202275 ttatcatataagtgcttaagtataagttatttctataacaaaa 4202233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 4757403 - 4757469
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||| | |||||||||| ||| | |||   |||| ||||||||||||||||||||||||||    
T  4757403 atgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagct 4757469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 17420238 - 17420320
Alignment:
Q  101 atggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    ||||||||||| || | |||| ||||| | |||| ||||| | |||||||||||||||| ||||| |||  ||||||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttatg 17420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 44422729 - 44422831
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    |||||||| |||||||||| |  || |||||| | |||||||||| | |||||||||||||| | | ||| ||||  ||||||||||  || ||||||||    
T  44422729 agcttatgaaaataagctgtagtcagcttatggacatgtcataagctattttcataagctctcccagacagtctcaaaagtgtttatcccagtagataag 44422828  T
Q  196 ctt 198  Q
    |||    
T  44422829 ctt 44422831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 216
Target Start/End: Complemental strand, 51929468 - 51929383
Alignment:
Q  130 tatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaa 216  Q
    ||||||||||| | |||||||||| |||  |||||| | || || ||| |||||||| |||||||||| |||| |||||||||||||    
T  51929468 tatgtcataagctgttttcataagttctcttaaacagtgtcacaggtgcttatgtcagtagataagctcaaaa-aagtcaatccaaa 51929383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 3110021 - 3110122
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||||||||| | | |||| ||||| || ||||| ||| | ||| |||||| ||||  ||||| ||||| ||||| |||||||| ||| ||||    
T  3110021 agcttatggaaataagcggaaaacaagttatggatgtgtcacaagttgtttgcataagttcttacaaacagtctcggaagtgcttatgtcactagttaag 3110120  T
Q  196 ct 197  Q
    ||    
T  3110121 ct 3110122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 29665945 - 29665912
Alignment:
Q  13 atatggccttgtttggataaacatcttaattaaa 46  Q
    ||||||||||||||||||||||| ||||||||||    
T  29665945 atatggccttgtttggataaacagcttaattaaa 29665912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 38170730 - 38170625
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    |||||| | ||| |||||| | |||||||||| | |||||||||| | |||||||||||||| | || || |||| |||||||| ||| || || |||||    
T  38170730 agcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtgttcatgccagtatataag 38170631  T
Q  196 cttaaa 201  Q
     |||||    
T  38170630 gttaaa 38170625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 45999467 - 45999392
Alignment:
Q  22 tgtttggataaacatcttaattaaa---aatggttatcgtataagtgctcaagtataaggtatttctataacaaaa 94  Q
    |||||| ||||||| ||||||||||   |||  |||| | ||||||||||| ||||||| ||||||||||||||||    
T  45999467 tgtttgaataaacaacttaattaaattaaattcttatagcataagtgctcatgtataagctatttctataacaaaa 45999392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Original strand, 6262050 - 6262134
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttt 180  Q
    ||||| |||||||||| || | | | |||||| | |||||||||| | || |||||||||||| |||||| |||| |||||||||    
T  6262050 agcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgtaaacagtctcacaagtgttt 6262134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 17269302 - 17269401
Alignment:
Q  118 acaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaac 217  Q
    |||||| ||| | |||||||||| | ||||||||||| || | |||||||||| ||||||||||  | |  ||||||| || ||| ||||||||||||||    
T  17269302 acaactcatgaacatgtcataaggtattttcataagcactaccaaacaatctcacaagtgtttaaataagaagataag-ttcaaataagtcaatccaaac 17269400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 28467297 - 28467230
Alignment:
Q  148 cataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaa 216  Q
    |||||||||| | ||||| | || ||||||||| ||||||||||||||| | ||||||| |||||||||    
T  28467297 cataagctctcccaaacagtttcacaagtgtttgtgtcaatagataagc-tcaaacaagccaatccaaa 28467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 218
Target Start/End: Original strand, 34536223 - 34536309
Alignment:
Q  131 atgtcataagatcttttcataagctcttct-aaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    |||||||||| | ||||||||||| | ||| ||||| |||| |||||||||||||||||||||| | || ||| |||||| ||||||||    
T  34536223 atgtcataagctgttttcataagc-catctcaaacagtctcacaagtgtttatgtcaatagatacg-ttcaaataagtcattccaaaca 34536309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 35017677 - 35017713
Alignment:
Q  161 aaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||| |||||||||||| |||||||||||||    
T  35017677 aaacaatctcacaagtgtttatgccaatagataagct 35017713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 39881726 - 39881646
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatc 212  Q
    |||||||||| | |||||| ||||||||| |||||||||| |||||||||||| ||||||||||| || ||| |||||||||    
T  39881726 atgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataag-ttcaaataagtcaatc 39881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 194
Target Start/End: Original strand, 6950352 - 6950450
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    ||||||||||||||||||| | |||||||||  | |||||||| | | ||| |||||||||| | |||||||||| ||| |||||||| || |||||||    
T  6950352 agcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataa 6950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 11569488 - 11569396
Alignment:
Q  105 aaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||| | |||||||||||| |||||||||| | ||| ||||||||||  |||||| |||| |||||| ||||| ||  |||||||||    
T  11569488 aaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgccagcagataagct 11569396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 14949899 - 14949983
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    |||| ||||||||||| | ||| |||||| | |||||||||| | |||||||||||||| ||||||| |||| ||| ||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 8629002 - 8629077
Alignment:
Q  21 ttgtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtataaggtatttctataacaaaata 96  Q
    |||||||||||||||| |||| || || || ||||| |||||||||| |  |||||| ||||||||||||||||||    
T  8629002 ttgtttggataaacattttaagtataagtgtttatcatataagtgcttatttataagctatttctataacaaaata 8629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 4560567 - 4560652
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaac 217  Q
    |||| ||||| | ||| |||||| ||||| |||||| ||| |||||| |||||||||||||||||| | ||| ||||||||||||||    
T  4560567 atgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagataagc-tcaaataagtcaatccaaac 4560652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 30191178 - 30191083
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    |||||||||||||||| | |||| || || | |||||||||| | ||| |||||||||| | ||||| |||  |||||| ||||| ||||||||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataa 30191083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 13000464 - 13000358
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||||||||||| | ||||||| || | |||||||||| | ||  ||||| |||||  ||| | |||| |||||| ||||| || ||| ||||    
T  13000464 agcttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgcttatgccagtaggtaag 13000365  T
Q  196 cttaaaa 202  Q
    |||||||    
T  13000364 cttaaaa 13000358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 7918486 - 7918385
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||| |||||||| |||| ||| |||||| | ||||| |||| | |||||||||||||| | ||||| |||| ||  || ||||| || ||||||||    
T  7918486 agcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctctcatctgcttatgccattagataag 7918387  T
Q  196 ct 197  Q
    ||    
T  7918386 ct 7918385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 10383915 - 10383972
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataag 153  Q
    ||||||||||||||||||| | ||| |||||| | |||||||||| | ||||||||||    
T  10383915 agcttatggaaataagctgtaaacagcttatgaaaatgtcataagctgttttcataag 10383972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 30918143 - 30918203
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctct 157  Q
    ||||||||||||||||||| | |||||||||| | |||||| ||| | ||||||||||||||    
T  30918143 agcttatggaaataagctgaaaacaacttatg-aaatgtcacaagttgttttcataagctct 30918203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 1137742 - 1137827
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttta 181  Q
    ||||||||||||||| ||| | |||||||||| | |||||||||||| |||||||||| ||| ||||||| | || ||||||||||    
T  1137742 agcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 195
Target Start/End: Original strand, 28232575 - 28232674
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||| |||||||||| || | |||||||||  ||| |||||||| | ||| || ||||||||| ||||| ||||||||||| | |||||||||||||||    
T  28232575 agcttgtggaaataagatgaaaacaacttataaataagtcataagttgtttccacaagctcttccaaacagtctcgcaagtgctcatgtcaatagataag 28232674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 3176141 - 3176043
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||||||||| | |||||||||  | ||| |||||||| |||||||||||||| ||||||| | || ||||||||| || ||| | |||||||    
T  3176141 ttatggaaataagctgaaaacaacttatagacatgacataagatgttttcataagctctcctaaacagtttcacaagtgtttgtgccaacatataagct 3176043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 18628555 - 18628492
Alignment:
Q  134 tcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    ||||||| | |||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagct 18628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 33534209 - 33534108
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    |||||||| |||||||||| | |||||||||| |||||||| ||  | ||||||||||||||   ||| | |||| |||||  |||||||| ||||||||    
T  33534209 agcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataag 33534110  T
Q  196 ct 197  Q
    ||    
T  33534109 ct 33534108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 28615387 - 28615485
Alignment:
Q  118 acaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaac 217  Q
    |||||||||| | ||||||| || | |||||||||| ||| | |||||||||| ||||||||||||  | ||||||| ||| ||| ||||||||||||||    
T  28615387 acaacttatgaaaatgtcattagctgttttcataagttctcc-aaacaatctcacaagtgtttatgctagtagataaactt-aaataagtcaatccaaac 28615484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 27721756 - 27721830
Alignment:
Q  105 aaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtt 179  Q
    |||||||||| | ||| |||||| ||||||||||||   |||| |||||||||  ||||||||||| ||||||||    
T  27721756 aaataagctgaaaacagcttatggatatgtcataagtagtttttataagctctcttaaacaatctcacaagtgtt 27721830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 4663842 - 4663801
Alignment:
Q  52 ttatcgtataagtgctcaagtataaggtatttctataacaaa 93  Q
    |||||||||||||||| | ||||||| |||||||||||||||    
T  4663842 ttatcgtataagtgcttatgtataagttatttctataacaaa 4663801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 197
Target Start/End: Original strand, 21157798 - 21157899
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||||||||||  | ||| ||| |||| |||||||||| | |||   |||||||||| ||||| |||  |||||| |||||||| ||||| ||    
T  21157798 agcttatggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgtcagtagatgag 21157897  T
Q  196 ct 197  Q
    ||    
T  21157898 ct 21157899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 180
Target Start/End: Complemental strand, 19394803 - 19394719
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttt 180  Q
    ||||||||||||||||||| || || |||||||| |||| ||||| | |||  |||||||||   ||||| |||| |||||||||    
T  19394803 agcttatggaaataagctgtattcagcttatgtacatgtaataagttgtttctataagctctggcaaacagtctcacaagtgttt 19394719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 23525759 - 23525731
Alignment:
Q  17 ggccttgtttggataaacatcttaattaa 45  Q
    |||||||||||||||||||||||||||||    
T  23525759 ggccttgtttggataaacatcttaattaa 23525731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 29778884 - 29778920
Alignment:
Q  147 tcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  29778884 tcataagcttttctaaacaatctcacaagtgtttatg 29778920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 54575595 - 54575512
Alignment:
Q  144 ttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaacatagcctaagt 228  Q
    |||||| ||| ||||| ||||||| |||||| || ||||||| ||| |||| || |||  ||||||||||||||||| |||||||    
T  54575595 ttttcacaagttcttccaaacaatatcgcaaatgcttatgtctataaataaactcaaat-aagtcaatccaaacataccctaagt 54575512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 8420237 - 8420114
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    |||||||||||||||| || | | | ||| || | |||||||||| | |||  |||||||||    |||| |||| ||||||||||||||||||||||||    
T  8420237 agcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataag 8420138  T
Q  196 cttaaaacaagtcaatccaaacat 219  Q
    || |||  ||||||||||||||||    
T  8420137 ctcaaataaagtcaatccaaacat 8420114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Original strand, 2455875 - 2455941
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||| ||||| |  ||||||||||    
T  2455875 atgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagct 2455941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 30863276 - 30863397
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||| ||| ||||||| | |||||||||||| |||||||||| | |||||||||||||| | ||| | |||  |||||||||||| ||||| ||| |    
T  30863276 agcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaatagg 30863375  T
Q  196 cttaaaacaagtcaatccaaaca 218  Q
    | | ||| |||||| ||||||||    
T  30863376 c-tcaaataagtcactccaaaca 30863397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 32171425 - 32171302
Alignment:
Q  94 atagcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 193  Q
    ||||||||||||||||||||| | | | ||| || |  ||||||||| | ||||||||||||||   ||||| ||||||||||| |||||||||||  ||    
T  32171425 atagcttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaatactta 32171326  T
Q  194 agcttaaaacaagtcaatccaaaca 218  Q
    ||| | ||| ||| |||||||||||    
T  32171325 agc-tgaaataagacaatccaaaca 32171302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 163
Target Start/End: Complemental strand, 7931766 - 7931699
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaa 163  Q
    |||||| |||||||||||| | |||||||| | | |||||||||| | ||||||||||||||||||||    
T  7931766 agcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaa 7931699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 32578022 - 32577903
Alignment:
Q  100 tatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagctta 199  Q
    ||||||||||||||| | ||| || | | | |||||||||| | ||||||||||||||   ||||||| || ||||| |||||| || |||| || || |    
T  32578022 tatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagtagagaaactaa 32577923  T
Q  200 aaacaagtcaatccaaacat 219  Q
    ||| ||||||||||||||||    
T  32577922 aaataagtcaatccaaacat 32577903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 34939777 - 34939875
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||||||||||||| | |||| ||||| | |||||||||| | ||| | |||||||| | ||||| | || ||| ||||||||||| ||||||||||    
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataagct 34939875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 193
Target Start/End: Original strand, 769194 - 769265
Alignment:
Q  122 cttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 193  Q
    |||||| | |||||||||||| |||||||||| || || ||||| |||| |||||||||||  |||||||||    
T  769194 cttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagtgtttataccaatagata 769265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 201
Target Start/End: Complemental strand, 8147080 - 8147001
Alignment:
Q  122 cttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaa 201  Q
    |||||| |||||| ||||| | |||||||||||||||  ||||| |||  |||||| |||||||||||| ||| ||||||    
T  8147080 cttatgcatatgttataagttgttttcataagctctttgaaacagtctaacaagtggttatgtcaataggtaaacttaaa 8147001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 31420975 - 31421038
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttc 159  Q
    |||||||| |||||||||| | |||||||||| |||||  ||||| | ||||||||||||||||    
T  31420975 agcttatgaaaataagctgaaaacaacttatgaatatgcgataagttgttttcataagctcttc 31421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 9027608 - 9027670
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctctt 158  Q
    |||||||| |||||||||| | |||||||||| | |||||||||| | ||| |||||||||||    
T  9027608 agcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctt 9027670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 194
Target Start/End: Complemental strand, 4331058 - 4331014
Alignment:
Q  150 taagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    |||| |||| ||||||||||| |||||| ||||||||||||||||    
T  4331058 taagttcttttaaacaatctcacaagtgcttatgtcaatagataa 4331014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 6536977 - 6537021
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataag 140  Q
    ||||||||||||||||||| | |||||||||| | ||||||||||    
T  6536977 agcttatggaaataagctgaaaacaacttatgaacatgtcataag 6537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 27857414 - 27857486
Alignment:
Q  122 cttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    |||||| | |||||||||| | |||||||||||||| | ||||| | || ||||||| ||||||| |||||||    
T  27857414 cttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataa 27857486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 33558585 - 33558467
Alignment:
Q  96 agcttatggaaataagctggatac-aacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    ||||||||||||||||||||| |  |||||||| ||||  ||| || |  ||| |||| |||||| ||||| |||  ||||||||||||| | |||||||    
T  33558585 agcttatggaaataagctggaaaataacttatgaatataacattagttgcttttataaactcttccaaacattctt-caagtgtttatgtgagtagataa 33558487  T
Q  195 gcttaaaacaagtcaatccaa 215  Q
    || ||||||| ||||||||||    
T  33558486 gc-taaaacatgtcaatccaa 33558467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 197
Target Start/End: Original strand, 11457154 - 11457229
Alignment:
Q  122 cttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||||| | |||||||||| | ||| |||||||||||| ||||| |||| ||||||||| || |||||||||||||    
T  11457154 cttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagct 11457229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 38728434 - 38728533
Alignment:
Q  98 cttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    ||||||||||||||||| | ||| |||| |   |||||||||| | |||||||||||||| | |||||||| | || ||||||||  |||||||||||||    
T  38728434 cttatggaaataagctgaaaacagcttaggagcatgtcataagctattttcataagctctcccaaacaatcacacaggtgtttataccaatagataagct 38728533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 2568712 - 2568769
Alignment:
Q  120 aacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtg 177  Q
    |||||||| |||||||||||| | |||||||||| ||||||||||| |||| ||||||    
T  2568712 aacttatgaatatgtcataagctgttttcataagttcttctaaacagtctctcaagtg 2568769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 6109513 - 6109608
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaataga 191  Q
    ||||| ||||||||||||| | |||||||||| | || ||||||  | ||| |||||||||| | ||| | |||| |||||||||||| |||||||    
T  6109513 agcttttggaaataagctgaaaacaacttatggacatatcataatttttttccataagctctccaaaatattctcacaagtgtttatgccaataga 6109608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 194
Target Start/End: Original strand, 7856605 - 7856667
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 194  Q
    |||||||||| | |||| ||||| |||| ||||||||||||||||||||| |||||||| ||||    
T  7856605 atgtcataagttgtttttataagttctt-taaacaatctcgcaagtgtttttgtcaataaataa 7856667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 40499848 - 40499780
Alignment:
Q  23 gtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtataaggtatttctataacaaa 93  Q
    ||||||||||||| |||||||||||  | ||||| |||||||||| | ||| ||| |||||||||||||||    
T  40499848 gtttggataaacaacttaattaaaa--gcttatcatataagtgcttatgtacaagttatttctataacaaa 40499780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 13264136 - 13264062
Alignment:
Q  105 aaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtt 179  Q
    |||||||||| | ||| |||||| ||||| |||||| | ||| ||||| |||||| ||||| |||||||||||||    
T  13264136 aaataagctgaaaacagcttatgaatatggcataagctgtttccataaactcttccaaacagtctcgcaagtgtt 13264062  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 35095826 - 35095752
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctc 170  Q
    |||||||||||||||| || | ||  | |||||| |||||||||||| ||| |||||||||||| ||||| ||||    
T  35095826 agcttatggaaataagttgaaaacggcatatgtacatgtcataagatatttccataagctcttccaaacagtctc 35095752  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 3977373 - 3977422
Alignment:
Q  131 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttt 180  Q
    |||||||||| | |||||||||| | |||||||||||||| |||||||||    
T  3977373 atgtcataagctgttttcataagtttttctaaacaatctcacaagtgttt 3977422  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 11095511 - 11095430
Alignment:
Q  120 aacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaa 201  Q
    |||||||| | |||||||||| | ||| || ||| |||   ||||||| || ||||||||||||||| ||||||||||||||    
T  11095511 aacttatggacatgtcataagctgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaa 11095430  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 35963271 - 35963340
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaaca 165  Q
    ||||||||||||||||||| | |||||||||| | |||||||| | | ||| |||||| ||| |||||||    
T  35963271 agcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataagttctcctaaaca 35963340  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 1899187 - 1899270
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    |||||||||||||||| | |||||||||| | |||||||||| | ||||  |||||||||| ||||| |||| ||  ||||||||    
T  1899187 ttatggaaataagctgaaaacaacttatgcacatgtcataagctgtttt-gtaagctcttcaaaacagtctcacatatgtttatg 1899270  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 37611255 - 37611175
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagt 176  Q
    ||||||||||||||| ||| | ||| |||||| | |||||| ||| | ||||||||||||||   |||||||||| |||||    
T  37611255 agcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagt 37611175  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 37787985 - 37787905
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagt 176  Q
    ||||||||||||||| ||| | ||| |||||| | |||||| ||| | ||||||||||||||   |||||||||| |||||    
T  37787985 agcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagt 37787905  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 38149442 - 38149406
Alignment:
Q  10 acaatatggccttgtttggataaacatcttaattaaa 46  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  38149442 acaatatggccctgtttggataaacaacttaattaaa 38149406  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 197
Target Start/End: Original strand, 33894660 - 33894758
Alignment:
Q  99 ttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 197  Q
    |||| ||||||||||| | |||||||||| | |||||||| | | ||||||||||||||   ||||| |||| |||||| |||||||| | ||||||||    
T  33894660 ttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagct 33894758  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 34754850 - 34754737
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    |||| |||||||||||||| | |||||||||     ||||||||||| ||||| ||||||||   ||||| ||||  |||||||| ||||||||||||||    
T  34754850 agctgatggaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctcataagtgtttgtgtcaatagataag 34754751  T
Q  196 cttaaaacaagtcaa 210  Q
    | | |||||||||||    
T  34754750 c-tcaaacaagtcaa 34754737  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 190
Target Start/End: Complemental strand, 39566237 - 39566153
Alignment:
Q  106 aataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatag 190  Q
    ||||||||| | |||||||||| | |||| |||| || ||| |||||||||||||||||  |||||||  |||||||| ||||||    
T  39566237 aataagctgaaaacaacttatggacatgtgataaaatgtttccataagctcttctaaactgtctcgcagatgtttatgccaatag 39566153  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 20553133 - 20553220
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 183  Q
    ||||||||||||||| ||| | |||||||||| | ||||| |||| | ||| |||||||||| || |||| |||| |||||| |||||    
T  20553133 agcttatggaaataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttatg 20553220  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 195
Target Start/End: Complemental strand, 36598388 - 36598297
Alignment:
Q  104 gaaataagctggatacaacttatgtatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 195  Q
    ||||||||||| | ||| |||||| | |||||||||||| ||| ||||||||||   |||||||||| ||| || |||||||| ||| ||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaag 36598297  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 26935597 - 26935547
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttt 146  Q
    ||||||||||||||||||| | ||| |||||| |||| |||||||||||||    
T  26935597 agcttatggaaataagctgaaaacagcttatgaatatttcataagatcttt 26935547  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 991964 - 992036
Alignment:
Q  21 ttgtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtataaggtatttctataacaaaa 94  Q
    ||||||||||||||| ||||||| ||  || ||||| |||||||||| | ||||||| | ||||||||||||||    
T  991964 ttgtttggataaacaccttaatttaag-tgtttatcatataagtgcttacgtataagttgtttctataacaaaa 992036  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 46082066 - 46082127
Alignment:
Q  96 agcttatggaaataagctggatacaacttatgtatatgtcataagatcttttcataagctct 157  Q
    |||||||| |||||||||| | ||||||||||   |||||||||| | ||||||||||||||    
T  46082066 agcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctct 46082127  T

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Target: scaffold0590 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 1069 - 996
Alignment:
Q  144 ttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    |||||||||||||||| |||||  ||| || || |||||| |||||||||||| ||| | |||||||||||||||    
T  1069 ttttcataagctcttccaaacagactcacatgtatttatgacaatagataagc-taacataagtcaatccaaaca 996  T

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Target: scaffold0275 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 2906 - 2979
Alignment:
Q  144 ttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagcttaaaacaagtcaatccaaaca 218  Q
    |||||||||||||||| |||||  ||| || || |||||| |||||||||||| ||| | |||||||||||||||    
T  2906 ttttcataagctcttccaaacagactcacatgtatttatgacaatagataagc-taacataagtcaatccaaaca 2979  T

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