View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_77 (Length: 362)

Name: NF6876A_low_77
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_77
NF6876A_low_77
[»] chr2 (1 HSPs)
chr2 (4-362)||(17759538-17759896)


Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 17759538 - 17759896
Alignment:
Q  4 catggaggctgaagctgcaaatcctcaagcttct---gtttctctggaagcaataacaggtgtcctgttcaatatctccctgaataaaaaatggtctaat 100  Q
    ||||||||||||| ||||||| ||||| ||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||||   |||||||||    
T  17759538 catggaggctgaatctgcaaaacctcatgcttcttctgtttctctggaagcaagaacaggtgtcctgttcaatatctccttgaataaa---tggtctaat 17759634  T
Q  101 ctattattttgtatcttgctgtgtttcctatgatcaccttagccaaaatctcacatggctttaaaactttaatttatgcttgtttgtgcaatcctgtcta 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17759635 ctattattttgtatcttgctgtgtttcctatgatcatcttagccaaaatctcacatggctttaaacctttaatttatgcttgtttgtgcaatcctgtcta 17759734  T
Q  201 ctctccttgtccctaatgatgtcttccctatgaaatactgtgactaaggcaaaaagtactgccagctaagaaagtctactgccgactgagaggcgtcctt 300  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  17759735 ctctccttgtccctgatgatgtcttccctatgaaatactgcgactaaggcaaaaagtactgccagctaagaatgtctactgccgactgagaggcgtcctt 17759834  T
Q  301 ttttcctagctgtcagtattttattcagtacatgattttggacatagggaggggacaaatga 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17759835 ttttcctagctgtcagtattttattcagtacatgattttggacatagggaggggacaaatga 17759896  T

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