View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6876A_low_79 (Length: 360)

Name: NF6876A_low_79
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6876A_low_79
NF6876A_low_79
[»] chr7 (5 HSPs)
chr7 (1-350)||(45341209-45341556)
chr7 (72-212)||(4548267-4548409)
chr7 (57-241)||(6011403-6011586)
chr7 (70-133)||(11622442-11622506)
chr7 (125-213)||(19432388-19432474)
[»] chr3 (4 HSPs)
chr3 (67-277)||(19800545-19800754)
chr3 (284-348)||(14258960-14259023)
chr3 (126-277)||(16018989-16019136)
chr3 (129-188)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (56-277)||(24819942-24820160)
chr8 (125-279)||(15061971-15062124)
chr8 (60-212)||(15662802-15662954)
chr8 (133-275)||(16723492-16723632)
chr8 (106-223)||(15550776-15550892)
chr8 (288-351)||(15061821-15061884)
chr8 (54-175)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (111-277)||(16673431-16673597)
chr4 (59-239)||(18448904-18449084)
chr4 (279-351)||(16673668-16673740)
chr4 (284-348)||(41806064-41806127)
chr4 (163-212)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (61-279)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (68-274)||(24134-24339)
[»] scaffold0338 (1 HSPs)
scaffold0338 (126-279)||(18545-18696)
[»] chr5 (2 HSPs)
chr5 (112-279)||(26058031-26058196)
chr5 (126-239)||(19079584-19079696)
[»] chr6 (6 HSPs)
chr6 (65-279)||(13123109-13123323)
chr6 (68-274)||(12331737-12331940)
chr6 (127-277)||(23846137-23846286)
chr6 (284-351)||(15483019-15483086)
chr6 (195-274)||(20891709-20891788)
chr6 (286-351)||(23846374-23846438)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-43)||(420420-420462)
[»] chr2 (2 HSPs)
chr2 (106-239)||(28579640-28579771)
chr2 (225-279)||(16592297-16592351)
[»] scaffold0086 (1 HSPs)
scaffold0086 (129-211)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 45341556 - 45341209
Alignment:
Q  1 aatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgatgttagtattatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341556 aatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgatgttagtattatg 45341457  T
Q  101 ggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcg 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341456 ggatgatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcg 45341357  T
Q  201 tttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttgggacttatgctatgtatttat 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341356 tttggttgaccgtttcgccatttttataaatggtgtagacgacgtgcaagtttgagttcgtattgcttgtgagtgcttgggacttatgctatgtatttat 45341257  T
Q  301 attattgccgagacttgttgtttatttatgtatgagatttgagatattgt 350  Q
    |||||||||  || ||||| |||||||||||||||||||| |||||||||    
T  45341256 attattgcc--gaattgttttttatttatgtatgagattttagatattgt 45341209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 4548409 - 4548267
Alignment:
Q  72 gataatattcacatgatgttagtattatgggataatgaacatgtgtat----atgtgatacttgaaatccttgaatgctatttctttgattatattttat 167  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||| |||    || ||||  |||||||||||||||||| |||||||||||||||| |||    
T  4548409 gataatattcacatgatgtcagtattataggatattgagcatgtatatctatatatgatgattgaaatccttgaatgct-tttctttgattatattgtat 4548311  T
Q  168 tatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 212  Q
    |||||| |||| ||| | |||||| ||| ||||||||||||||||    
T  4548310 tatgtggaatattatctcacccct-aatagtcgtttggttgaccg 4548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 241
Target Start/End: Original strand, 6011403 - 6011586
Alignment:
Q  57 tatgattgattttaagataatattcacatgatgttagtatt-atgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 155  Q
    ||||||||  || ||||| ||||||| | |||||||||||| | || || ||||| |||| | |||||||||  |||| || | ||||| ||| ||| ||    
T  6011403 tatgattggattgaagatgatattcataagatgttagtattcaaggaatgatgaatatgtatgtatgtgatatgtgaa-tcgtagaatgttatatctatg 6011501  T
Q  156 attatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatg 241  Q
     |||||| || ||||||||| || ||| |||||||||| | ||||||||||||||||  || |||||| || ||||||||||||||    
T  6011502 cttatatctttttatgtgaa-tattatctaacccctcagttgtcgtttggttgaccgcctcaccatttctaaaaatggtgtagatg 6011586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 11622442 - 11622506
Alignment:
Q  70 aagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaa 133  Q
    ||||||||||| | |||||||||||||| | ||| | |||||||||| |||||||||||||||||    
T  11622442 aagataatatttatatgatgttagtattttaggaatgatgaacatgtatatatgtgatacttgaa 11622506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 19432388 - 19432474
Alignment:
Q  125 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgt 213  Q
    |||||||||||| |||||||||||||  |||||||||||||||||| || |||| ||| |||| || |  | |||||||||||||||||    
T  19432388 atacttgaaatcattgaatgctattt-attgattatattttattatatggaatattatctaactccac-gtagtcgtttggttgaccgt 19432474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 19800754 - 19800545
Alignment:
Q  67 tttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 166  Q
    |||| |||||||||| ||||||| ||||||| | |||| |||| ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  19800754 tttatgataatattcgcatgatgatagtattctaggatgatgagcatgtatatatgtggtatttgaaatccttgaatgctatttctttgattagatttta 19800655  T
Q  167 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 266  Q
    ||||||| |||| ||| | ||||  || |||| ||||||||||| |  ||||||||||||| ||||||||| | |||||||||||||||||| | |||||    
T  19800654 ttatgtggaatattatctcacccaccagtggttgtttggttgactgcctcgccatttttat-aatggtgtacacgacgtgcaggtttgagtttgcattgc 19800556  T
Q  267 ttgtgagtgct 277  Q
    |||| ||||||    
T  19800555 ttgtaagtgct 19800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 14259023 - 14258960
Alignment:
Q  284 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatatt 348  Q
    ||||| ||||||||||||||||||  |||||||||||| || |||||||||||||||||||||||    
T  14259023 ttatgttatgtatttatattattgatgagacttgttgtcta-ttatgtatgagatttgagatatt 14258960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 277
Target Start/End: Original strand, 16018989 - 16019136
Alignment:
Q  126 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 225  Q
    ||||||||||||||||||||||||| | ||   || ||||||||| || |||| ||| ||| ||  |||||||| |||||||||||   |  |||||| |    
T  16018989 tacttgaaatccttgaatgctattt-tatgc--atgttttattatatggaatattatataaacca-caatggtcatttggttgaccacctacccatttgt 16019084  T
Q  226 ataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 277  Q
    ||||||||||| || |||||||| |||||||||| | ||| |||||||||||    
T  16019085 ataaatggtgtggacgacgtgcatgtttgagttcttgttgtttgtgagtgct 16019136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 188
Target Start/End: Original strand, 25387029 - 25387088
Alignment:
Q  129 ttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacc 188  Q
    |||||||| ||||||| |||||| || ||||||||||||||||||||||  |||||||||    
T  25387029 ttgaaatctttgaatgttatttcctttattatattttattatgtgaaatgttatttaacc 25387088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 56 - 277
Target Start/End: Original strand, 24819942 - 24820160
Alignment:
Q  56 ttatgattgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 155  Q
    |||| |||||||||| || |||||||| | |||||||||||| | |||| |||| ||||| ||||||||||  ||||||||||||||| |||||| | ||    
T  24819942 ttatcattgattttatgacaatattcatacgatgttagtattctaggatgatgagcatgtatatatgtgatgtttgaaatccttgaattctattt-tgtg 24820040  T
Q  156 attatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttga 255  Q
     || ||||||| |||||| |||| ||| |||| ||| | | ||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||    
T  24820041 cttttattttactatgtggaatattatctaactcct-agttgtcgtttggttgaccgcctcaccatttgtataaatggtgtagatgacgtgcaggtttga 24820139  T
Q  256 gttcgtattgcttgtgagtgct 277  Q
    | ||||||||||||||||||||    
T  24820140 g-tcgtattgcttgtgagtgct 24820160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 125 - 279
Target Start/End: Complemental strand, 15062124 - 15061971
Alignment:
Q  125 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttt 224  Q
    ||||||||||||||||| ||  ||||  ||||||||||||||||||||| |||| ||| |||||  ||| |||| |||||||||||||  |  ||||||     
T  15062124 atacttgaaatccttgactgtcatttacttgattatattttattatgtggaatattatctaacct-tcagtggttgtttggttgaccgcctacccatttg 15062026  T
Q  225 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 279  Q
    ||| ||||||||||| |||||||| | |||||||| |||||||||||||||||||    
T  15062025 tatgaatggtgtagacgacgtgcatgattgagttcctattgcttgtgagtgcttg 15061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 15662802 - 15662954
Alignment:
Q  60 gattgattttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgatt 158  Q
    |||||| || ||||||||||||| | |||||||||||| | ||| || ||| ||||| ||||||||||||||||||  || ||||||||||| | || ||    
T  15662802 gattgaattgaagataatattcatacgatgttagtattctaggaatattgagcatgtatatatgtgatacttgaaaatctagaatgctatttttgtgctt 15662901  T
Q  159 atattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 212  Q
     ||| || ||||||| |||| ||| |||||||  | ||||||||||||||||||    
T  15662902 gtatctttttatgtg-aatattatctaaccccctagtggtcgtttggttgaccg 15662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 275
Target Start/End: Complemental strand, 16723632 - 16723492
Alignment:
Q  133 aatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatg 232  Q
    |||| |||||| ||||| |||||||| |||||||| || ||||||| ||| |||||  ||| |||||||||| || ||||  |  |||||| ||| ||||    
T  16723632 aatcattgaattctattactttgattttattttatcatatgaaatattatctaacc--tcattggtcgtttgatttaccgcctacccatttgtatgaatg 16723535  T
Q  233 gtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtg 275  Q
    |||||||  ||||||||  |||||| |||||||||||||||||    
T  16723534 gtgtagacaacgtgcagacttgagtccgtattgcttgtgagtg 16723492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 15550776 - 15550892
Alignment:
Q  106 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttgg 205  Q
    |||| ||||| |||||||||| ||||||||  | ||||||||||| | ||||||||| || ||||||| |||| ||| ||||| || | |||||||||||    
T  15550776 atgagcatgtatatatgtgattcttgaaattatagaatgctatttttgtgattatatatttttatgtg-aatattatataacctcttagtggtcgtttgg 15550874  T
Q  206 ttgaccgtttcgccattt 223  Q
    ||||| || || ||||||    
T  15550875 ttgactgtctcaccattt 15550892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 15061884 - 15061821
Alignment:
Q  288 gctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 351  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||| ||| |||||||||||||||    
T  15061884 gctatgtatttattttattgatgagacttgctgtctatttatgtctgaaatttgagatattgtt 15061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 22502004 - 22502125
Alignment:
Q  54 tgttatgattgattttaagataatattcacatgatgttagtattat-gggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttct 152  Q
    |||||||||||| || |||||||||||||  ||||| ||||||| | || || |||| ||||| ||||||||||| ||| |||||| ||||| ||| | |    
T  22502004 tgttatgattgaattaaagataatattcatgtgatggtagtattctaggaatgatgagcatgtatatatgtgatatttg-aatcctagaatgttatattt 22502102  T
Q  153 ttgattatattttattatgtgaa 175  Q
     || |||||| || |||||||||    
T  22502103 gtgcttatatatttttatgtgaa 22502125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 111 - 277
Target Start/End: Original strand, 16673431 - 16673597
Alignment:
Q  111 catgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgac 210  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||  | || |||||||||||||||     
T  16673431 catgtatatatttgatacttgaaatccttgaatgctatttctttgattaaattttattatgtggaatattatctaacatcccagtggtcgtttggttgag 16673530  T
Q  211 cgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 277  Q
    |   || | |||| || ||||||||||||  || |||||||||||||||||||| ||||||||||||    
T  16673531 cacctcactatttctaaaaatggtgtagacaacatgcaggtttgagttcgtattacttgtgagtgct 16673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 18449084 - 18448904
Alignment:
Q  59 tgattgattttaagataatattcacatgatgttagtattat-gggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgat 157  Q
    ||||||| || |||||||||||||||||||||||||||| |  | ||| ||  |||||  |||||||||||||||||| ||  ||||||| || | || |    
T  18449084 tgattgagttgaagataatattcacatgatgttagtattgtaagaatattgtgcatgtaaatatgtgatacttgaaattctataatgctacttttgtgct 18448985  T
Q  158 tatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtaga 239  Q
    ||||  || ||||||| |||| ||| |||||||  | ||||||||| ||||||||  || |||||| || ||||||||||||    
T  18448984 tatacgtttttatgtg-aatattatctaaccccctagtggtcgtttagttgaccgcctcaccatttataaaaatggtgtaga 18448904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 16673668 - 16673740
Alignment:
Q  279 gggacttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 351  Q
    |||||||||| | ||||||||| |||||||  | ||||||||||||||||||| | |||||||||||||||||    
T  16673668 gggacttatgttgtgtatttatgttattgctaaaacttgttgtttatttatgtctaagatttgagatattgtt 16673740  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 41806127 - 41806064
Alignment:
Q  284 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatatt 348  Q
    |||||||||| |||||||||| |||||||||||||| | || |||||| ||||||||||||||||    
T  41806127 ttatgctatgcatttatattactgccgagacttgttatcta-ttatgtctgagatttgagatatt 41806064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 13933079 - 13933031
Alignment:
Q  163 tttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 212  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||||    
T  13933079 tttattatgtgaaatattatctaacccc-cagtggtcgtttggttgaccg 13933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 61 - 279
Target Start/End: Original strand, 71223 - 71437
Alignment:
Q  61 attgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattat 160  Q
    ||||| |||| |||||||||| ||||||||||||||| | |||| ||||| |||| | ||||| ||||||||||| |||||||||   ||||||||||||    
T  71223 attgagtttaggataatattcgcatgatgttagtattctaggatgatgaatatgtatgtatgtaatacttgaaattcttgaatgc---ttctttgattat 71319  T
Q  161 attttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcg 260  Q
    || |||||||||| |||| ||| ||| |||||| ||||||||||||||||||  |  |||||| |||||||| |||||| |  ||||| | |  |||||     
T  71320 atcttattatgtggaatattatctaa-ccctcactggtcgtttggttgaccgcctacccatttgtataaatgttgtagacggtgtgcatgatcaagttct 71418  T
Q  261 tattgcttgtgagtgcttg 279  Q
    |||||||||||||||||||    
T  71419 tattgcttgtgagtgcttg 71437  T

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Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 24134 - 24339
Alignment:
Q  68 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 166  Q
    |||||||||||||||||||||||||||||| | ||| | ||||| |||| ||| ||  |||||||||||||||||||| ||||| | |||||||||||||    
T  24134 ttaagataatattcacatgatgttagtattctaggagtgatgaatatgtatatgtgctatacttgaaatccttgaatgttattt-tatgattatatttta 24232  T
Q  167 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 266  Q
    |||||||||||  ||| ||| |||||| |||| |||||||||||||  |  |||||| ||| ||||||||||| |||||||| | |||||  | |||||     
T  24233 ttatgtgaaatgttatctaa-ccctcagtggttgtttggttgaccgcctacccatttgtatgaatggtgtagacgacgtgcatgattgagaacttattgt 24331  T
Q  267 ttgtgagt 274  Q
    ||||||||    
T  24332 ttgtgagt 24339  T

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Target: scaffold0338 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 279
Target Start/End: Original strand, 18545 - 18696
Alignment:
Q  126 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 225  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||| |||| ||| |||||| ||| ||||||||||||||||||| |  |||||| |    
T  18545 tacttgaaatccttgaatgctgttt-tatgattatattttattatgtggaatattatctaaccc-tcagtggtcgtttggttgaccgtctacccatttgt 18642  T
Q  226 ataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 279  Q
    || ||||||||| | | |||||| | |||||||| |||| ||||||||||||||    
T  18643 atgaatggtgtaaacggcgtgcatgattgagttcttatttcttgtgagtgcttg 18696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 26058196 - 26058031
Alignment:
Q  112 atgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgacc 211  Q
    |||||||| | | |||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||| |||||||| | ||||| ||||||||| |    
T  26058196 atgtgtatgtataatacttgaaatccttgaatgatattt-tatgattatattttattatgtggaatattatctaacccct-agtggtcatttggttgatc 26058099  T
Q  212 gtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 279  Q
    |  |  |||||| ||||||||||||||| |  ||||| | |||||||| |||||||| | ||||||||    
T  26058098 gcctacccatttgtataaatggtgtagacggagtgcatgattgagttcttattgcttataagtgcttg 26058031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 19079584 - 19079696
Alignment:
Q  126 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 225  Q
    ||||| |||||||  |||||||||||| || |||||| || ||||||||| |  ||| ||||| | || |||| |||||||||||||  || ||||||||    
T  19079584 tactttaaatcctataatgctatttctgtgcttatatctttttatgtgaa-tgttatctaacctcccagtggttgtttggttgaccggctcaccattttt 19079682  T
Q  226 ataaatggtgtaga 239  Q
    | ||||||||||||    
T  19079683 aaaaatggtgtaga 19079696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 279
Target Start/End: Original strand, 13123109 - 13123323
Alignment:
Q  65 attttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttcttt-gattatat 162  Q
    |||| |||||||||||||||| ||||||||||| |  || | |||| |||||  || |||  || |||||||| ||||||||||||| ||| ||||||||    
T  13123109 atttgaagataatattcacattatgttagtattttacgaatgatgagcatgtacatgtgtattaattgaaatcattgaatgctatttattttgattatat 13123208  T
Q  163 tttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgta 262  Q
    ||||||| ||||| ||  || |||||| ||| || ||||||| ||| ||| ||  |||||| ||| ||||||||||| | ||||||   |||| ||| ||    
T  13123209 tttattacgtgaa-tataatctaaccc-tcagtgatcgtttgattggccgcttacccatttgtatgaatggtgtagacggcgtgcaaaattgatttctta 13123306  T
Q  263 ttgcttgtgagtgcttg 279  Q
    |||||||||||||||||    
T  13123307 ttgcttgtgagtgcttg 13123323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 274
Target Start/End: Original strand, 12331737 - 12331940
Alignment:
Q  68 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 166  Q
    ||||||||||||||| |||||||||||||| | ||| | ||||| |||| ||| ||  |||||  ||||||| |||| |||||| | || ||||||||||    
T  12331737 ttaagataatattcatatgatgttagtattctaggagtgatgaatatgtatatgtgctatacta-aaatcctagaattctattt-tatgtttatatttta 12331834  T
Q  167 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 266  Q
    ||||||| ||||  || |||||||  | ||||||||| ||||||||  |  |||||| ||| ||||||||||| ||| || | | || ||||| ||||||    
T  12331835 ttatgtggaatataatctaacccc--agtggtcgtttagttgaccgcctacccatttgtatgaatggtgtagacgacatgtatgattaagttcttattgc 12331932  T
Q  267 ttgtgagt 274  Q
    ||||||||    
T  12331933 ttgtgagt 12331940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 277
Target Start/End: Original strand, 23846137 - 23846286
Alignment:
Q  127 acttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttta 226  Q
    ||||||||||| |||||| ||||| | || ||||||||||| |||||||||| ||| | ||||  || ||||||||||||| ||||  |  | ||||| |    
T  23846137 acttgaaatccatgaatgttattt-tatgtttatattttatcatgtgaaatattatctcaccctccagtggtcgtttggttaaccgcattactattttaa 23846235  T
Q  227 taaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 277  Q
     |||||||||||||  | |||| |||||| ||| ||||| |||||||||||    
T  23846236 aaaatggtgtagatagcatgcatgtttgatttcttattgattgtgagtgct 23846286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 15483019 - 15483086
Alignment:
Q  284 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 351  Q
    ||||| ||||||||||| ||  ||| ||||||| |||| || |||||| |||||||||||||||||||    
T  15483019 ttatgttatgtatttatgttgctgctgagacttattgtctagttatgtttgagatttgagatattgtt 15483086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 274
Target Start/End: Complemental strand, 20891788 - 20891709
Alignment:
Q  195 tggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagt 274  Q
    ||||||||||||||||||  |  |||||| ||| ||||||||||| | |||||| | |||| ||| ||||||||||||||    
T  20891788 tggtcgtttggttgaccgcctacccatttgtatgaatggtgtagacggcgtgcatgattgatttcttattgcttgtgagt 20891709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 23846374 - 23846438
Alignment:
Q  286 atgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgtt 351  Q
    |||||||| |||||||||||||  |||||||| |||||| |||||| |||| || |||||||||||    
T  23846374 atgctatgcatttatattattgttgagacttg-tgtttaattatgtctgaggttggagatattgtt 23846438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 420462 - 420420
Alignment:
Q  1 aatttaattgttggtgatgtgatgacctcttgatgttgaaatg 43  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  420462 aatttaattattggtgatgtgatgacctcttgatgttgaaatg 420420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 239
Target Start/End: Original strand, 28579640 - 28579771
Alignment:
Q  106 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttgg 205  Q
    |||| ||||| ||||||||||| ||||| ||||  |||||||| | | || |||||| || || |||||| || ||| ||||||| ||||||||||||||    
T  28579640 atgagcatgtatatatgtgatatttgaa-tcctaaaatgctatatttgtgcttatatctttttgtgtgaa-tattatctaaccccacaatggtcgtttgg 28579737  T
Q  206 ttgaccgtttcgccatttttataaatggtgtaga 239  Q
    |||||| | || |||||| || |||| |||||||    
T  28579738 ttgaccatctctccatttgtaaaaatagtgtaga 28579771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 279
Target Start/End: Original strand, 16592297 - 16592351
Alignment:
Q  225 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 279  Q
    ||||||||||| ||| | |||||||| |||||||| ||||||| |||||||||||    
T  16592297 tataaatggtggagacggcgtgcaggattgagttcttattgctagtgagtgcttg 16592351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 11300 - 11379
Alignment:
Q  129 ttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgacc 211  Q
    ||||||||||||||| || ||| ||||||||| ||| ||| |||| |||||||||||||||| || || ||||||||||||||    
T  11300 ttgaaatccttgaatact-tttatttgattatgttt-attgtgtggaatactatttaacccc-cagtgatcgtttggttgacc 11379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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