View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_82 (Length: 359)
Name: NF6876A_low_82
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 2 - 344
Target Start/End: Complemental strand, 1842577 - 1842235
Alignment:
| Q |
2 |
caaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatatctacattct |
101 |
Q |
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| T |
1842577 |
caaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatatctacattct |
1842478 |
T |
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| Q |
102 |
catcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacacnnnnnnngac |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1842477 |
catcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacacaaaaaaagac |
1842378 |
T |
|
| Q |
202 |
taaaatttcatggtaaattcaaacttcatggtatatcaacggaagttttagtctttttaaatttaaattctacttattccttcttcaccactttttctct |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1842377 |
taaaatttcatggtaaattcaaacttcatggtatatcaacggaagttttagtctttttaaatttaaattctacttattccttcttcaccactttttctct |
1842278 |
T |
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| Q |
302 |
ctcaaaccgaaaccgaccatgacactaaaacaatcattgatgt |
344 |
Q |
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| T |
1842277 |
ctcaaaccgaaaccgaccatgacactaaaacaatcattgatgt |
1842235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 2 - 191
Target Start/End: Original strand, 1841644 - 1841833
Alignment:
| Q |
2 |
caaaacaaatagttcacataaatgaatgtcatcacaaaaaattagcaatacacagctgtatgatatgcaaataaatacccaaactgtatatctacattct |
101 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1841644 |
caaaacaaacagttcacataaatgaatgtcatcacaacaaattaacaatacacaactgtatgatatacaaataaatacccaaactgtatatctacattct |
1841743 |
T |
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| Q |
102 |
catcaacatatttgttggtaaaagccaactcgatacgttggaggaaagaggttggtatcttatctgcagacttcttgacagcaacaacac |
191 |
Q |
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|||||||||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||||||| ||||||||||||||||||| |||| |
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| T |
1841744 |
catcaacatatttgctggtaaaatccaactcgatacgtttgaggaaagcggttggaatcttatctccagacttcttgacagcaaccacac |
1841833 |
T |
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