View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_88 (Length: 352)
Name: NF6876A_low_88
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 60 - 335
Target Start/End: Complemental strand, 17232854 - 17232578
Alignment:
| Q |
60 |
tgttatatattttggcgcactcggtggtttctcaagcaaaatctagtattatttt-gcactatttggccaggttgtgcatgggtcatctaaaagaaaaga |
158 |
Q |
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| T |
17232854 |
tgttatatattttggcgcactcggtggtttctcaagtaaaatttggtattatttttgcactatttggctaggttgtgcatgggtcatctaaaagaaaaga |
17232755 |
T |
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| Q |
159 |
aattatcgttgattccagcaaaaagtaaattcaattgaccatgtgtttgataaaataaagttgttatcttattggtggttgaaagcaaataatccaaatt |
258 |
Q |
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| T |
17232754 |
aattatcgttgattccagcaaaaagtaaattcaattgaccatgtgtttgataaaataaagttgttatcttattggtggttgaaagcaaacaatccaaatt |
17232655 |
T |
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| Q |
259 |
taggttctgatcttaaacgttggtgggtaaattctttgatgtatttgggtttaatccactagttgtgtttctatgtt |
335 |
Q |
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| T |
17232654 |
taggttctgatcttaaacgttggtgggtaaattctttgatgtatttgggtttaatccactagttgtgtttttatgtt |
17232578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17233117 - 17233054
Alignment:
| Q |
1 |
tcataatattacttggaacaaagttgtcctgttaaaagtattgatttttgcttggcatttgtta |
64 |
Q |
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| T |
17233117 |
tcataatattatttggaacaaagttgtcctgttaaaagtatcgatttttgcttggcatttgtta |
17233054 |
T |
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