View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_91 (Length: 347)
Name: NF6876A_low_91
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_91 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 39 - 337
Target Start/End: Original strand, 9804675 - 9804972
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
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| Q |
139 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
238 |
Q |
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| T |
9804775 |
catcgatcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttt |
9804874 |
T |
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| Q |
239 |
tcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttcatatannnnnnnatcttgatcattttgcatgtctttctca |
337 |
Q |
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| T |
9804875 |
tcatgaaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatat-tttttttatctagatcattttgcatgtctttctca |
9804972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
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| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
154 |
Q |
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| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
18 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
117 |
Q |
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|||||| ||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| ||| | ||||||||||||||| |
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| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
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| Q |
118 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
157 |
Q |
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| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 9817777 - 9817857
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttt |
295 |
Q |
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| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaacttttt |
9817857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
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| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
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| Q |
139 |
catcgatca |
147 |
Q |
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||||||||| |
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| T |
9817440 |
catcgatca |
9817448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 11788 - 11866
Alignment:
| Q |
218 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaactttttt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |
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| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttt |
11866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
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| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
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| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
161 |
Q |
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| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
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| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
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| Q |
139 |
catcgatcagaaaaaagaa |
157 |
Q |
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| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 215 - 298
Target Start/End: Complemental strand, 42778900 - 42778818
Alignment:
| Q |
215 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatccaaacttttttca |
298 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttca |
42778818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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