View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_92 (Length: 347)
Name: NF6876A_low_92
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 32139398 - 32139053
Alignment:
| Q |
1 |
tcgaacaatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactcaagccatggctaattccaattttca |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32139398 |
tcgatcaatataatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttacatctttacactctagccatggctaattccaattttca |
32139299 |
T |
|
| Q |
101 |
acacttcattacaatccttctcctatttttcttcattacaccaactttctcccaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32139298 |
acacttcattacaatccttctcctatttttcttcatttcacccactttctctcaacaatctttcaggccaaaagcccttgttctcccaatcacaaaagat |
32139199 |
T |
|
| Q |
201 |
ggggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32139198 |
ggggccacaacaaaccaatacaaagctcaaatcaaccagagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttg |
32139099 |
T |
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| Q |
301 |
actgcgaaaacaaatacatttcttccacataccgccctgcacgctg |
346 |
Q |
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| T |
32139098 |
actgcgaaaacaaatacatttcttccacataccgccctgcacgctg |
32139053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 12 - 343
Target Start/End: Complemental strand, 32148786 - 32148446
Alignment:
| Q |
12 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactcaagccatggctaattccaattttcaac |
102 |
Q |
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| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
|
| Q |
103 |
acttcattacaatccttctcctatttttcttcattacaccaactttctcccaacaatctttcaggccaaaagcccttgttctcccagtcacaaaagatgg |
202 |
Q |
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| T |
32148686 |
acttcattacaaccctcctcctatttttcttcatttcacccactttctctaaacaatctttcaggccaaaagccctagttctcccagtcacaaaagatgt |
32148587 |
T |
|
| Q |
203 |
ggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctcggtggccagtttctttgggttgac |
302 |
Q |
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|| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||| |||||||| |
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| T |
32148586 |
cgctaccacaaaccaatacaaagctcaaatcaaccaaagaacaccactagtcccactgaacatcatcgtcgatctcggtggcctgtttctctgggttgat |
32148487 |
T |
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| Q |
303 |
tgcgaaaacaaatacatttcttccacataccgccctgcacg |
343 |
Q |
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| T |
32148486 |
tgcgaaaaccagtacatttcctccacataccgtcctgcacg |
32148446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 80 - 339
Target Start/End: Complemental strand, 32127534 - 32127274
Alignment:
| Q |
80 |
catggctaattccaattttcaacacttcattacaatccttctcctatttttcttcattacaccaactttctcccaacaatctttcaggccaaaagccctt |
179 |
Q |
| |
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|||||||||| |||| || |||||||||||| | | || || |||| ||||||||||||||||||||||| |||||||| ||||| || ||||| ||| |
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| T |
32127534 |
catggctaataccaacttccaacacttcatttcccttctccttttattgttcttcattacaccaactttctctcaacaatcattcagacccaaagcactt |
32127435 |
T |
|
| Q |
180 |
gttctccc-agtcacaaaagatggggccacaacaaaccaatacaaagctcaaatcaaccaaagaaccccattagtcccactgaacgtcatcgtcgatctc |
278 |
Q |
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|||||||| ||||||||||||| | || |||||| |||||||| ||||||||| ||||||||||||||| |||||||||| ||| | |||| ||||| |
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| T |
32127434 |
gttctccccagtcacaaaagatagcgcaacaacactccaatacatagctcaaattaaccaaagaaccccactagtcccactaaaccttgtcgttgatctt |
32127335 |
T |
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| Q |
279 |
ggtggccagtttctttgggttgactgcgaaaacaaatacatttcttccacataccgccctg |
339 |
Q |
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|| ||| | ||||| ||||| ||||| |||||| | |||| ||| |||||||||||||||| |
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| T |
32127334 |
ggcggcaaatttctctgggtcgactgtgaaaaccactacacttcctccacataccgccctg |
32127274 |
T |
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