View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6876A_low_93 (Length: 346)
Name: NF6876A_low_93
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_93 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 34958934 - 34959277
Alignment:
| Q |
1 |
gttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattgtata |
100 |
Q |
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| T |
34958934 |
gttcgtgtatgagtttgtgtttcatagtattaccatattccaaaagcaacttacatttcaaaatttcatatggttaa-gtcattgattcaggattgtaca |
34959032 |
T |
|
| Q |
101 |
-aaaaagttcatgccatattaacaagtgcgcctcatcaac----aatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgca |
195 |
Q |
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| T |
34959033 |
caaaaagtgcaggacatattaacaagtgcgcctcatcaacgtacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgca |
34959132 |
T |
|
| Q |
196 |
cattgaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgca |
295 |
Q |
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| T |
34959133 |
cattgaaactatattaatcatctctcaaagttcttagaaattggcttcaaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgca |
34959232 |
T |
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| Q |
296 |
tgcattttattttaaagatatgattcatttgcatttcactcttgt |
340 |
Q |
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| T |
34959233 |
tgcattttattttaaagatatgattcatttgcatttcactcttgt |
34959277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 3921650 - 3921320
Alignment:
| Q |
1 |
gttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagcaactcacattccaatatttcatatggttaaagtcattgattcaggattgtata |
100 |
Q |
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| T |
3921650 |
gttcgtgtatgagtttgtgtttcatagtatcaccatattccgaaagtaattcacattcggaaatttcatatggttaaagtcattgattgaggattgtaca |
3921551 |
T |
|
| Q |
101 |
-aaaaagttcatgccatattaacaagtgcgcctcatcaacaatagtacatatttgttgtaacggtgaaacaagtctaagatccagcctcatgtgcacatt |
199 |
Q |
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||||||| | | ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3921550 |
caaaaagtgtaggacatattaacaagt----------aacaatagtacatatttgttgtaactgtgaaacaagtctaagatccagcctcatgtgcacatt |
3921461 |
T |
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| Q |
200 |
gaaactatattaatcatctctcaaagttcaaagaaattggcttccaaaaatgcttttcaaaatctggaaaacttgacctttttggcatatgatgcatgca |
299 |
Q |
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||| ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3921460 |
gaacctatattaatcatctctcacagttcaaagaaattggtttcagaaaatgcttttcaaaatctggaaagcttgacctttttggcatatgatgcatgca |
3921361 |
T |
|
| Q |
300 |
ttttattttaaagatatgattcatttgcatttcactcttgt |
340 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
3921360 |
ttttattttaaagatatgattcatctgcatttcactcttgt |
3921320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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