View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6876A_low_96 (Length: 340)
Name: NF6876A_low_96
Description: NF6876A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6876A_low_96 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 316
Target Start/End: Original strand, 2838500 - 2838811
Alignment:
| Q |
5 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtc |
2838599 |
T |
|
| Q |
105 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2838600 |
tgcatcagcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagt |
2838699 |
T |
|
| Q |
205 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838700 |
tccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacc |
2838799 |
T |
|
| Q |
305 |
tctcatattgtc |
316 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2838800 |
tctcatattgtc |
2838811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 2842784 - 2842912
Alignment:
| Q |
188 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
287 |
Q |
| |
|
||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
|
| Q |
288 |
tctttcttcaattaacctctcatattgtc |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||| |
|
|
| T |
2842884 |
tctttcttcaattaacctctcgtattgtc |
2842912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2842522 - 2842573
Alignment:
| Q |
1 |
tggacatcaagaacatcagactcagtatcataaaaggatctatgcatatcat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
150 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
184 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University