View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_high_1 (Length: 599)

Name: NF6877_high_1
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_high_1
NF6877_high_1
[»] chr7 (5 HSPs)
chr7 (1-356)||(18226172-18226530)
chr7 (475-581)||(18225969-18226075)
chr7 (6-141)||(18226526-18226660)
chr7 (176-235)||(8745871-8745930)
chr7 (178-233)||(41243214-41243269)
[»] chr4 (4 HSPs)
chr4 (171-265)||(19680324-19680418)
chr4 (178-209)||(23564560-23564591)
chr4 (171-241)||(2346413-2346483)
chr4 (176-209)||(44019609-44019642)
[»] chr5 (2 HSPs)
chr5 (178-265)||(8402134-8402221)
chr5 (178-259)||(8402005-8402086)
[»] chr3 (7 HSPs)
chr3 (171-235)||(30135506-30135570)
chr3 (171-235)||(30141635-30141699)
chr3 (171-235)||(30145057-30145121)
chr3 (171-206)||(30134110-30134145)
chr3 (178-209)||(50196933-50196964)
chr3 (178-263)||(30130793-30130878)
chr3 (178-266)||(11047474-11047562)
[»] chr8 (1 HSPs)
chr8 (178-206)||(42160477-42160505)


Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 18226530 - 18226172
Alignment:
Q  1 gtaaaatttttaaaattgaatattaaactaaacgaattgatctcattttatattttgataataaaaatgtaggcttacggtgtaattcttcaatccaaag 100  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  18226530 gtaaaatttaaaaaattgaatattaaactaaacgaattgatctcattttatattttgatgataaaaatgtaggcttacggtgcaattcttcaatccaaag 18226431  T
Q  101 aagtgaaaatcttagaactcagaaaaatatatactcataaataaaattacat---ccttcacttaaaagaactaatatgcttggatctcatcccaaaagt 197  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||    
T  18226430 aagtgaaaatcttagaactcagaaaaatatatactcgtaaataaaattacatttaccttcacttaaaagaactaatatgcttggatctcattccaaaagt 18226331  T
Q  198 tagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgggcctgg-tttaagtccaaaattctaccattga 296  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  18226330 tagctcaaaggaggaggagactcaattatatttatacaatcgacatcccgaaaacctgagagatgtgggcctggttttaagtccaaaattctaccattga 18226231  T
Q  297 tannnnnnnnncttattaaaaatgatttactatatatcaagcgaggtactatttttcttt 356  Q
    ||         |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18226230 ta-ttttttttcttattaaaaatgatttactatttatcaagcgaggtactatttttcttt 18226172  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 475 - 581
Target Start/End: Complemental strand, 18226075 - 18225969
Alignment:
Q  475 ttagcacaaaaactttcttcatgaaaaatgtgatgaaggatatggttaactttttcagcatgaattctcttgttcattaacatgatgatgaaattgagac 574  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18226075 ttagcacaaaaactttcttcacgaaaaatgtgatgaaggatatggttaactttttcagcatgaattctcttgttcattaacatgatgatgaaattgagac 18225976  T
Q  575 gtccccc 581  Q
    |||||||    
T  18225975 gtccccc 18225969  T

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Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 18226660 - 18226526
Alignment:
Q  6 atttttaaaattgaatattaaactaaacgaattgatctcattttatattttgataataaaaatgtaggcttacggtgtaattcttcaatccaaagaagtg 105  Q
    ||||| ||||||||||||| ||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  18226660 attttaaaaattgaatattgaactataaaaattgatctcattttatattttgttaataaaaatgtaggcttacggtgtaattcttcaatccaaagaagag 18226561  T
Q  106 aaaatcttagaactcagaaaaatatatactcataaa 141  Q
    ||||| ||||||||| ||||||||||||||| ||||    
T  18226560 aaaatattagaactc-gaaaaatatatactcgtaaa 18226526  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 8745871 - 8745930
Alignment:
Q  176 gcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 235  Q
    ||||||||||||||||||||||||||| ||||||  |||| |||| |  |||||||||||    
T  8745871 gcttggatctcatcccaaaagttagcttaaaggatgaggatactcgaacatatttataca 8745930  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 41243214 - 41243269
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttata 233  Q
    |||||||||||||||||||||||||||| |||  |||  |||||| ||||||||||    
T  41243214 ttggatctcatcccaaaagttagctcaacggatgaggttactcaagtatatttata 41243269  T

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Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 19680324 - 19680418
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgg 265  Q
    ||||||||||||||| |||||||||||||||||||| ||| ||| |||||||  |||||||||||||||||| |||  || ||||||||||||||    
T  19680324 aatatgcttggatcttatcccaaaagttagctcaaaagaggaggggactcaagcatatttatacaatcgacagcccggaatcctgagcgatgtgg 19680418  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 209
Target Start/End: Original strand, 23564560 - 23564591
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaagga 209  Q
    ||||||||||||||||||||||||||||||||    
T  23564560 ttggatctcatcccaaaagttagctcaaagga 23564591  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 241
Target Start/End: Complemental strand, 2346483 - 2346413
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgac 241  Q
    |||| |||| |||||||||||||||| |||||| |||||| ||| || | ||  |||||||||||||||||    
T  2346483 aataagcttagatctcatcccaaaagctagctcgaaggaggaggggattgaagcatatttatacaatcgac 2346413  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 44019609 - 44019642
Alignment:
Q  176 gcttggatctcatcccaaaagttagctcaaagga 209  Q
    |||| |||||||||||||||||||||||||||||    
T  44019609 gcttagatctcatcccaaaagttagctcaaagga 44019642  T

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Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 178 - 265
Target Start/End: Original strand, 8402134 - 8402221
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtgg 265  Q
    |||||| |||||||||||||||||||||||||| |||  ||||||  ||||||||||| |||||| ||| |||||||||| |||||||    
T  8402134 ttggatttcatcccaaaagttagctcaaaggaggagggtactcaaacatatttatacactcgacagcccgaaaacctgagagatgtgg 8402221  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 8402005 - 8402086
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcg 259  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||  ||||||||||| |||||| ||| | ||||||||||    
T  8402005 ttggatctcattccaaaagttagctcaaaggaggagggtactcaagcatatttatacactcgacagcccgagaacctgagcg 8402086  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 30135506 - 30135570
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 235  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30135506 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30135570  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 30141635 - 30141699
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 235  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30141635 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30141699  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 30145057 - 30145121
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttataca 235  Q
    |||| ||||||||||||||||||||||||||||||| ||  |||  ||||||  |||||||||||    
T  30145057 aataggcttggatctcatcccaaaagttagctcaaatgatgagggtactcaagcatatttataca 30145121  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Original strand, 30134110 - 30134145
Alignment:
Q  171 aatatgcttggatctcatcccaaaagttagctcaaa 206  Q
    |||| |||||||||||||||||||||||||||||||    
T  30134110 aataggcttggatctcatcccaaaagttagctcaaa 30134145  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 209
Target Start/End: Complemental strand, 50196964 - 50196933
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaagga 209  Q
    ||||||||||||||||||||||||||||||||    
T  50196964 ttggatctcatcccaaaagttagctcaaagga 50196933  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 30130793 - 30130878
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgt 263  Q
    ||||||||||||||||||  ||||||||| ||  | || ||||||  ||||||||||| || ||| ||||| ||||||||| ||||    
T  30130793 ttggatctcatcccaaaaactagctcaaatgatgaagatactcaagcatatttatacactcaacagcccaagaacctgagcaatgt 30130878  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 266
Target Start/End: Complemental strand, 11047562 - 11047474
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaaggagaaggagactcaattatatttatacaatcgacatcccaaaaacctgagcgatgtggg 266  Q
    ||||||||||||  ||||||||||||||||||  |||  ||||||   |||||||||| || ||| | || |||||||||| |||||||    
T  11047562 ttggatctcatcataaaagttagctcaaaggatgagggtactcaagcgtatttatacactcaacagcgcacaaacctgagcaatgtggg 11047474  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 42160505 - 42160477
Alignment:
Q  178 ttggatctcatcccaaaagttagctcaaa 206  Q
    |||||||||||||||||||||||||||||    
T  42160505 ttggatctcatcccaaaagttagctcaaa 42160477  T

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