View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_high_11 (Length: 248)

Name: NF6877_high_11
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_high_11
NF6877_high_11
[»] chr7 (12 HSPs)
chr7 (6-248)||(2691067-2691309)
chr7 (13-247)||(2136005-2136239)
chr7 (13-247)||(2099371-2099605)
chr7 (13-195)||(2126683-2126865)
chr7 (13-195)||(2073697-2073879)
chr7 (13-247)||(2244899-2245133)
chr7 (13-192)||(2066599-2066778)
chr7 (13-192)||(2114796-2114975)
chr7 (13-186)||(2139298-2139471)
chr7 (13-118)||(2057556-2057661)
chr7 (13-117)||(1695942-1696046)
chr7 (115-248)||(2057262-2057398)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 2691067 - 2691309
Alignment:
Q  6 tttcgtgttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatc 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||| ||    
T  2691067 tttcgtcttgtgcaccttcgagttcttgatctttctgataataacttcaattactctaaaatcccgtccaagataggtatgctttcgcaactaaaatttc 2691166  T
Q  106 tgaacctttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaag 205  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  2691167 tgaacctttctcttagcttattctctggagaaattccaccacaaatttcacagttgtccaagctgcagtctcttgatctaggcttaagagatatagcaag 2691266  T
Q  206 tcctaaaggtagtgcagttaatctgttgcaactcaaattgtcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2691267 tcctaaaggtagtgcagttaatctgttgcaactcaaattgtcc 2691309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2136239 - 2136005
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  | ||||||||| |||||||||||||||||| | |||||||    
T  2136239 ttgtgcaccttcgagttcttgatctatctgataataacttcaattactctaaaatccctaccaagataggtgagctttcacaactaaaatttttgaacct 2136140  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    |||||| | |||||| |||||||||||||||  ||||||||| |||||||||||||||  ||||||||||||||| ||||||| ||||| | ||||||||    
T  2136139 ttctcttaacttattttctggagaaattccacgacaagtttcccagttgtccaagttgttgtctcttgatctaggtttcagagctatagtacgtcctaaa 2136040  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2136039 ggtagtacatccaatttgttgcaactcaaattgtc 2136005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2099605 - 2099371
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||| ||||||||||    
T  2099605 ttgtacaccttcgagttcttgatctttctgacaatgacttcaattactctccaatcccgtccaagataggtcagctttcacaattaaaacatctgaacct 2099506  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    ||| || |||||||| ||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||||||| ||||| ||||| |  |||||||    
T  2099505 ttcccttagcttattttctggagaaattccaccacatgtttcacagttgtcaaagttgttgtctcttgatctaggctacagagctatagtacatcctaaa 2099406  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2099405 ggtagtacatccaatttgttgcaactcaaattgtc 2099371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2126865 - 2126683
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||||    
T  2126865 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggtgagctttcacaattaaaacatctgaacct 2126766  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagag 195  Q
    ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2126765 ttccctgagcttcttttctggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctaggcttcagag 2126683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2073879 - 2073697
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||| ||    
T  2073879 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggtgagctttcacaattaaaacatctgaaact 2073780  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagag 195  Q
    ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2073779 ttccctgagcttcttttctggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctaggcttcagag 2073697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 2244899 - 2245133
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||| ||||||||| | |||||||||| ||| ||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  2244899 ttgtacaccttcgattacttgatctttttgacaacgacttcaattactctcaaatcccgtccaagataggtgagctttcacaactaaaatatctaaacct 2244998  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    |||| | |||||||| || ||||||||||||  |||| ||||||||||||||||||||  ||||||||||||||| ||||||| ||||| | ||||||||    
T  2244999 ttctattagcttattttcaggagaaattccacaacaattttcacagttgtccaagttgttgtctcttgatctaggtttcagagctatagtacgtcctaaa 2245098  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2245099 ggtagtacatccaatttgttgcaactcaaattgtc 2245133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2066778 - 2066599
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  2066778 ttgtgcaccttcgagttcttgatctttccgacaatgacttcaattactctcaaatcccatccaagataggtaagctttcacaactaaaatttctgaacct 2066679  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttca 192  Q
    |||||  || ||||| || |||||||||||| |||||||||||||| |||||||||||  ||||||||||||||||||||    
T  2066678 ttctcgtagtttattttccggagaaattccaccacaagtttcacagctgtccaagttgttgtctcttgatctaggcttca 2066599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2114975 - 2114796
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  2114975 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggcgagctttcacaactaaaatttctgaacct 2114876  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttca 192  Q
    |||||  || ||||| || |||||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  2114875 ttctcgtagtttattttccggagaaattccaccacaagtttcacagttgtctaagttgttgtctcttgatctaggcttca 2114796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 2139471 - 2139298
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||||||    
T  2139471 ttgtgcatcttcgagttcttgatctttctgacaatgacttcaattactctcaaattccatccaagataggtaagctttcacaactaaaatttctgaacct 2139372  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctag 186  Q
    |||||  || ||||| || |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  2139371 ttctcgtagtttattttccggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctag 2139298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 2057661 - 2057556
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||    
T  2057661 ttgtgcaccttcaagttcttgatctttctgacaatgacttcaattactccaaaatcccgtctaagataggtgagcttccacgactaaaatttctgaacct 2057562  T
Q  113 ttctct 118  Q
    ||||||    
T  2057561 ttctct 2057556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 1695942 - 1696046
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||||||||||||||||| | |||||| | ||||| ||||||| |||||| |||| ||||||  ||||||| ||  |||||||| | |||||    
T  1695942 ttgtgcaccttcgagttcttgatcttgcagataatgatttcaaatactctcgaatcccatctaggataggcgagctttcgcagataaaatatttaaacct 1696041  T
Q  113 ttctc 117  Q
    |||||    
T  1696042 ttctc 1696046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 2057398 - 2057262
Alignment:
Q  115 ctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatct---aggcttcagagatatagcaagtcctaa 211  Q
    |||| |||||||| ||| ||||||||||| |||||||||||||||||| || |||||  |||||||||||   |||||| |||| | ||| |  ||||||    
T  2057398 ctcttagcttattttctagagaaattccaccacaagtttcacagttgttcatgttgctctctcttgatcttggaggctttagagctgtagtacatcctaa 2057299  T
Q  212 aggtagtgcagttaatctgttgcaactcaaattgtcc 248  Q
    ||||||| ||   |||||||||||| | |||||||||    
T  2057298 aggtagtacatccaatctgttgcaattaaaattgtcc 2057262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University