View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_high_12 (Length: 247)
Name: NF6877_high_12
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 8177185 - 8177406
Alignment:
| Q |
18 |
caatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatgga |
117 |
Q |
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| T |
8177185 |
caatcccttgaccccaatagttgaatccaatagcataacccatatctgctttatatttctcatcattagcatgaggaagaatccaaaccattccaatgga |
8177284 |
T |
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| Q |
118 |
gtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaaccttctttctttgaattacaagtttccaatcgagta |
217 |
Q |
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| T |
8177285 |
gtggtcatcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaagcttctttctttgaattacaagtttccaatcgagta |
8177384 |
T |
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| Q |
218 |
tcctcaattactctttcatctc |
239 |
Q |
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| T |
8177385 |
tcctcaattactctttcatctc |
8177406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 8169606 - 8169756
Alignment:
| Q |
23 |
ccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatggagtggt |
122 |
Q |
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| T |
8169606 |
ccttggccccaatagttaaacccaatagcataacctaaatctgctttaaactttgcatca---ggataaggaaggacaaaaacaattccaatagagtgat |
8169702 |
T |
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| Q |
123 |
catcaagacatattgattggcggattgggtaaatgcattcattttttatgaaat |
176 |
Q |
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| T |
8169703 |
cattaagacatattgattgttggaatgggtaaatgcaatcattttttatgaaat |
8169756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 8172237 - 8172392
Alignment:
| Q |
23 |
ccttgaccccaatagttgaatccaatagcataacccatatctgctttatacttctcatcattagcatgaggaagaatccaaaccattccaatggagtggt |
122 |
Q |
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| T |
8172237 |
ccttggccccaataattgaatccaatagcaaaacctaaatctgctttaaactttgcataa---gaaattggaagaacaaaaacaattccaatagagtgat |
8172333 |
T |
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| Q |
123 |
catcaagacatattgattggcggattgggtaaatgcattcattttttatgaaatccaaa |
181 |
Q |
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| T |
8172334 |
catcaagacatattgattgttggaatgggtaaatacaatctttctttatgaaattcaaa |
8172392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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