View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_high_16 (Length: 240)

Name: NF6877_high_16
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_high_16
NF6877_high_16
[»] chr7 (4 HSPs)
chr7 (15-224)||(2489729-2489938)
chr7 (23-94)||(35474145-35474216)
chr7 (158-220)||(13124928-13124990)
chr7 (156-220)||(2189431-2189495)
[»] chr8 (9 HSPs)
chr8 (136-214)||(31283453-31283531)
chr8 (156-220)||(34308730-34308794)
chr8 (23-97)||(2044109-2044183)
chr8 (23-73)||(17103132-17103182)
chr8 (156-194)||(22548816-22548854)
chr8 (23-97)||(33852279-33852353)
chr8 (23-87)||(22549026-22549090)
chr8 (156-220)||(32292228-32292292)
chr8 (23-87)||(41659136-41659200)
[»] scaffold0040 (1 HSPs)
scaffold0040 (156-220)||(2461-2525)
[»] chr4 (14 HSPs)
chr4 (156-220)||(50398783-50398847)
chr4 (144-214)||(21067557-21067627)
chr4 (144-220)||(23943031-23943107)
chr4 (158-220)||(15306341-15306403)
chr4 (147-220)||(27578698-27578771)
chr4 (136-220)||(4127683-4127767)
chr4 (23-82)||(29628697-29628756)
chr4 (23-97)||(1645764-1645838)
chr4 (158-220)||(14571942-14572004)
chr4 (26-87)||(41869972-41870033)
chr4 (152-220)||(13265919-13265987)
chr4 (156-220)||(24629225-24629289)
chr4 (23-87)||(44471350-44471414)
chr4 (23-87)||(49998687-49998751)
[»] scaffold0333 (1 HSPs)
scaffold0333 (144-220)||(4835-4911)
[»] scaffold0002 (1 HSPs)
scaffold0002 (156-220)||(154589-154653)
[»] chr6 (4 HSPs)
chr6 (156-220)||(7912165-7912229)
chr6 (152-214)||(3652806-3652868)
chr6 (136-186)||(6331197-6331247)
chr6 (23-87)||(2681247-2681311)
[»] chr5 (12 HSPs)
chr5 (23-95)||(16370731-16370803)
chr5 (147-219)||(22556815-22556887)
chr5 (156-220)||(2474236-2474300)
chr5 (23-97)||(1821957-1822031)
chr5 (23-97)||(10927424-10927498)
chr5 (23-97)||(39146990-39147064)
chr5 (23-87)||(189119-189183)
chr5 (23-87)||(2474010-2474074)
chr5 (156-220)||(3886852-3886916)
chr5 (23-87)||(21886177-21886241)
chr5 (136-220)||(30684807-30684890)
chr5 (156-220)||(34371899-34371963)
[»] chr3 (10 HSPs)
chr3 (156-220)||(13150349-13150413)
chr3 (156-220)||(25230500-25230564)
chr3 (156-220)||(25238087-25238151)
chr3 (23-94)||(20885141-20885212)
chr3 (23-94)||(32796959-32797030)
chr3 (156-220)||(16811212-16811276)
chr3 (144-220)||(25238922-25238998)
chr3 (23-97)||(30529738-30529812)
chr3 (156-220)||(25802807-25802871)
chr3 (156-220)||(39653451-39653515)
[»] chr1 (15 HSPs)
chr1 (156-220)||(20057514-20057578)
chr1 (156-220)||(20054331-20054395)
chr1 (156-220)||(20054787-20054851)
chr1 (156-220)||(20055243-20055307)
chr1 (156-220)||(20055699-20055763)
chr1 (156-220)||(20056155-20056219)
chr1 (156-220)||(31822914-31822978)
chr1 (164-220)||(43057315-43057371)
chr1 (136-220)||(50002502-50002586)
chr1 (156-219)||(35759860-35759923)
chr1 (23-93)||(30872975-30873045)
chr1 (33-89)||(2739583-2739639)
chr1 (156-220)||(20056611-20056675)
chr1 (156-220)||(20057058-20057122)
chr1 (144-212)||(35168293-35168361)
[»] scaffold0022 (1 HSPs)
scaffold0022 (156-220)||(162929-162993)
[»] chr2 (4 HSPs)
chr2 (156-220)||(33174789-33174853)
chr2 (26-97)||(1707095-1707166)
chr2 (156-214)||(30966521-30966579)
chr2 (23-52)||(18447984-18448013)
[»] scaffold0005 (1 HSPs)
scaffold0005 (158-220)||(245372-245434)
[»] scaffold0442 (1 HSPs)
scaffold0442 (157-214)||(2336-2393)
[»] scaffold0047 (1 HSPs)
scaffold0047 (25-74)||(18178-18227)
[»] scaffold0020 (1 HSPs)
scaffold0020 (23-87)||(107494-107558)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 2489729 - 2489938
Alignment:
Q  15 agaatgtgtggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagcccaaactgaaaagagttgtg 114  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  2489729 agaatgtgtggttgaagtaagacttataagaattgtttaatattgcagatatcaacaagacgtgtcttcttttttgtagcctaaactaaaaagagttgtg 2489828  T
Q  115 tttgtttgcaaggtcacgtgtcaatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  2489829 tttgtttgtaaggtcacgtgtcaatcttgaaagtcgactgagatgttacaaatggtattagagaagacctcttccagtacgatatagttcagggacgaac 2489928  T
Q  215 gaagcgcggg 224  Q
    ||||| ||||    
T  2489929 gaagcacggg 2489938  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 35474216 - 35474145
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagc 94  Q
    ||||||||| ||||||||||||||||||||| |||| |  |||||||||||| |  |||||||||| |||||    
T  35474216 tggttgaagaaagacttataagaattgtttagtactacttatatcaacaagatgcatcttctttttggtagc 35474145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 13124990 - 13124928
Alignment:
Q  158 tgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||| |||||||| ||||||| || | ||||| ||| |||| |||||    
T  13124990 tgttacaaatggtatcagagcagacctctcccagtacgatgtggttcgaggatgaaccaagcg 13124928  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 2189431 - 2189495
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||| |||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  2189431 gatgttactaatggtatcagagccgacctctcccagtacggtgtggttcggggacgaaccaagcg 2189495  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 31283531 - 31283453
Alignment:
Q  136 caatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    |||| |||||||||| ||| |||||||||||||||||||||| |||||||||||| ||| || | ||||| ||||||||    
T  31283531 caatgttgaaagtcgtctgggatgttacaaatggtatcagagcagacctcttccaatacgatgtggttcgaggacgaac 31283453  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 34308794 - 34308730
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| ||||||| || | ||||| | |||||| |||||    
T  34308794 gatgttacaaatggtatcagagcagacctctcccagtacgatgtggttcgagaacgaaccaagcg 34308730  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 2044109 - 2044183
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||| ||| |||||||||||||||| ||||| |  |||||||||||| |  | |||||||| ||||||||    
T  2044109 tggttgaaggaaggcttataagaattgtttgatactacctatatcaacaagatgcattttctttttggtagccca 2044183  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 17103132 - 17103182
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaag 73  Q
    ||||||||| ||||||||||||||||||||  ||||||  |||||||||||    
T  17103132 tggttgaaggaagacttataagaattgtttggtactgcctatatcaacaag 17103182  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 22548854 - 22548816
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtac 194  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  22548854 gatgttacaaatggtatcagagcagacctctcccagtac 22548816  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 33852353 - 33852279
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||| || |||||||||||||||||  |||| |  |||| ||||||| || |||||||||| ||||||||    
T  33852353 tggttgaaggaaaacttataagaattgtttggtactacctatattaacaagatgtatcttctttttggtagccca 33852279  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 22549090 - 22549026
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |  |||||||||    
T  22549090 tggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgcatcttctttt 22549026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 32292228 - 32292292
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||| ||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  32292228 gatgttacaaatggtattagagccgacctctcccagtacggtgtggttcggggacgaaccaagcg 32292292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 41659200 - 41659136
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |  |||||||||    
T  41659200 tggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgcatcttctttt 41659136  T

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Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 2525 - 2461
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| ||||||| || ||||||| |||||||| |||||    
T  2525 gatgttacaaatggtatcagagcagacctctcccagtacgatgtagttcgaggacgaactaagcg 2461  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 50398847 - 50398783
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| |||||||  | | ||||||||||||||||||||    
T  50398847 gatgttacaaatggtatcagagcagacctctcccagtacagtgtggttcggggacgaacgaagcg 50398783  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 21067557 - 21067627
Alignment:
Q  144 aaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    ||||||| ||| |||||||||||||||||||||| |||||||| |||||||| | | ||||||||| ||||    
T  21067557 aaagtcgtctgggatgttacaaatggtatcagagcagacctctcccagtactgtgtggttcggggatgaac 21067627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 23943107 - 23943031
Alignment:
Q  144 aaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||| ||| |||||||||||||||||||||| | |||||| |||||||  | | |||||||||||||| |||||    
T  23943107 aaagtcgtctgggatgttacaaatggtatcagagcatacctctcccagtacggtgtggttcggggacgaaccaagcg 23943031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 15306403 - 15306341
Alignment:
Q  158 tgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||| |||||||||||||||||||| ||||||| || | ||||| |||||||| |||||    
T  15306403 tgttacaattggtatcagagaagacctctcccagtacgatgtggttcgaggacgaaccaagcg 15306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 27578771 - 27578698
Alignment:
Q  147 gtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||| |||||||||||||| ||||||||||| | |||||| ||||||| |||| || |||||| |||| |||||    
T  27578771 gtcgtctgagatgttacaactggtatcagagcaaacctctcccagtacgatatggtccggggaagaaccaagcg 27578698  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 4127767 - 4127683
Alignment:
Q  136 caatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||  | ||| ||||||||||||||||| ||||  ||||||| |||||||  | || ||||||||||||| |||||    
T  4127767 caatcttgaaagcagtctgggatgttacaaatggtataagagccgacctctcccagtacggtgtatttcggggacgaaccaagcg 4127683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 29628756 - 29628697
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtctt 82  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |||||||    
T  29628756 tggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgtgtctt 29628697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 1645838 - 1645764
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||| ||||||||||||||||||||  || | |  |||||||||||| |  |||||||||| ||||||||    
T  1645838 tggttgaaggaagacttataagaattgtttggtattacctatatcaacaagatgcatcttctttttggtagccca 1645764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 14572004 - 14571942
Alignment:
Q  158 tgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||| |||| ||| ||||||| || | ||||| |||||||| |||||    
T  14572004 tgttacaaatggtatcagagcagacttctcccagtacaatgtggttcgaggacgaaccaagcg 14571942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 41869972 - 41870033
Alignment:
Q  26 ttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    |||||| |||||||||||||||||| | ||||| |  ||||||||||||||  |||||||||    
T  41869972 ttgaaggaagacttataagaattgtatgatactacctatatcaacaagacgcatcttctttt 41870033  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Original strand, 13265919 - 13265987
Alignment:
Q  152 ctgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||| || |||||||||| | |||| ||||||| | || |||| ||||||||| |||||    
T  13265919 ctgagatgttacaagtgatatcagagaatatctctcccagtacgacatggttctgggacgaaccaagcg 13265987  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 24629289 - 24629225
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||| ||||||||| |||||    
T  24629289 gatgttacaaatggtatcagagccgacctctcccagtacggtgttgttcagggacgaaccaagcg 24629225  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 44471414 - 44471350
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |  |||||||||    
T  44471414 tggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgcatcttctttt 44471350  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 49998687 - 49998751
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |  |||||||||    
T  49998687 tggttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgcatcttctttt 49998751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 4835 - 4911
Alignment:
Q  144 aaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||| ||||||||||||||||||||||  ||||||| |||||||  | | ||||||||| |||| |||||    
T  4835 aaagtcgactgggatgttacaaatggtatcagagccgacctctcccagtacggtgtggttcggggaagaaccaagcg 4911  T

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Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 154589 - 154653
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| |||||||  | | |||||||||||||| |||||    
T  154589 gatgttacaaatggtatcagagcagacctctcccagtacggtgtcgttcggggacgaaccaagcg 154653  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 7912165 - 7912229
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| ||||||| || | ||||| |||||||| |||||    
T  7912165 gatgttacaaatggtatcagagcagacctctcccagtacgatgtggttcgaggacgaaccaagcg 7912229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 3652806 - 3652868
Alignment:
Q  152 ctgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    |||||||||||||| ||||||||||| |||||||| |||||||  | | ||||||||||||||    
T  3652806 ctgagatgttacaattggtatcagagcagacctctcccagtacggtgtggttcggggacgaac 3652868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 6331247 - 6331197
Alignment:
Q  136 caatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctct 186  Q
    ||||||||||||  | |||||||||||||||||||||||||| ||||||||    
T  6331247 caatcttgaaagcagtctgagatgttacaaatggtatcagagcagacctct 6331197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 2681311 - 2681247
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||  ||||||||||||||||||||  |||| | ||||||||||||| |  |||||||||    
T  2681311 tggttgaatgaagacttataagaattgtttggtactacccatatcaacaagatgcatcttctttt 2681247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 16370803 - 16370731
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagcc 95  Q
    ||||||||| || |||||||||||||||||  |||| |  ||||||||||||||| |||||||||| ||||||    
T  16370803 tggttgaaggaaaacttataagaattgtttggtactacttatatcaacaagacgtatcttctttttggtagcc 16370731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 22556815 - 22556887
Alignment:
Q  147 gtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagc 219  Q
    |||| ||| |||||||||||||||||||||| |||||||| ||||||| || | ||||| |||||||| ||||    
T  22556815 gtcgtctgggatgttacaaatggtatcagagcagacctctcccagtacgatgtggttcgaggacgaaccaagc 22556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 2474236 - 2474300
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||| ||||||||||||| |||||||| ||||||| || | ||||| |||||||| |||||    
T  2474236 gatgttaccaatggtatcagagcagacctctcccagtacgatgtggttcgaggacgaaccaagcg 2474300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 1821957 - 1822031
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||| ||| ||||||||||||||||  |||| |  |||||||||||| |  |||||||||| ||||||||    
T  1821957 tggttgaaggaaggcttataagaattgtttggtactacctatatcaacaagatgcatcttctttttggtagccca 1822031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 10927498 - 10927424
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||| ||| ||||||||||||||||  |||| |  |||||||||||| |  |||||||||| ||||||||    
T  10927498 tggttgaaggaaggcttataagaattgtttggtactacctatatcaacaagatgcatcttctttttggtagccca 10927424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 39146990 - 39147064
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    |||||||||  ||||||||||||||||||| ||||| |  |||| ||||||| |  |||||||||| ||||||||    
T  39146990 tggttgaaggtagacttataagaattgtttgatactacttatattaacaagatgcatcttctttttggtagccca 39147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 189119 - 189183
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||| ||||||||||||||||  |||| |  |||||||||||| || |||||||||    
T  189119 tggttgaaggaaggcttataagaattgtttggtactacctatatcaacaagatgtatcttctttt 189183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 2474010 - 2474074
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||| ||||||||||||||||  ||||||  |||||||||||| |  |||||||||    
T  2474010 tggttgaaggaaggcttataagaattgtttggtactgcctatatcaacaagatgcatcttctttt 2474074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 3886916 - 3886852
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||| |||||| | |||||| ||||||| || | ||||| |||||||| |||||    
T  3886916 gatgttacaaatggtgtcagagcaaacctctcccagtacgatgtggttcgaggacgaaccaagcg 3886852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 21886241 - 21886177
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||| ||||||||||||||||  |||| || |||||||||||| |  |||||||||    
T  21886241 tggttgaaggaaggcttataagaattgtttggtactacatatatcaacaagatgcatcttctttt 21886177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 30684890 - 30684807
Alignment:
Q  136 caatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||  |  ||||||||||||  |||||||| || ||||||| |||||||| || | |||||||||||||| |||||    
T  30684890 caatcttgaaagcagtttgagatgttacacgtggtatcaaagtagacctc-tccagtacgatgtggttcggggacgaaccaagcg 30684807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 34371899 - 34371963
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||   ||||||| |||||||  | | |||||||||||||| |||||    
T  34371899 gatgttacaaatggtatcagatccgacctctcccagtacggtgtggttcggggacgaaccaagcg 34371963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 13150413 - 13150349
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| |||||||  | | |||||||||||||| |||||    
T  13150413 gatgttacaaatggtatcagagcagacctctcccagtacggtgtcgttcggggacgaaccaagcg 13150349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 25230564 - 25230500
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||| ||| |||||  | |||||||||||||||| |||||    
T  25230564 gatgttacaaatggtatcagagcagaccttttcaagtacggtgtagttcggggacgaaccaagcg 25230500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 25238151 - 25238087
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||| ||| |||||  | |||||||||||||||| |||||    
T  25238151 gatgttacaaatggtatcagagcagaccttttcaagtacggtgtagttcggggacgaaccaagcg 25238087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 20885212 - 20885141
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagc 94  Q
    ||||||||| |||||||||||||||||||| ||||| |  |||||||||||| |  |||||||||| |||||    
T  20885212 tggttgaaggaagacttataagaattgtttgatactacctatatcaacaagatgcatcttctttttagtagc 20885141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 32797030 - 32796959
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagc 94  Q
    ||||||||| ||||||||||||||||||||  |||| |  |||||||||||| |  ||||||||||||||||    
T  32797030 tggttgaagcaagacttataagaattgtttggtactacctatatcaacaagatgcatcttcttttttgtagc 32796959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 16811212 - 16811276
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||| || |||||||| |||||||  | | |||||||||||||| |||||    
T  16811212 gatgttacaaatggtatcatagcagacctctcccagtacggtgtggttcggggacgaaccaagcg 16811276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 25238998 - 25238922
Alignment:
Q  144 aaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||  ||||||||||||||||||||||||| |||||| | |||||||  | | ||||||||| |||| |||||    
T  25238998 aaagtcgtatgagatgttacaaatggtatcagagcagacctttcccagtacggtgtggttcggggatgaaccaagcg 25238922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 30529738 - 30529812
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    ||||||||||||| |||||||||||| |||  |||| |  |||||||||||| |  |||||||||| ||||||||    
T  30529738 tggttgaagtaaggcttataagaattttttggtactacctatatcaacaagatgcatcttctttttggtagccca 30529812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 25802871 - 25802807
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||| ||||||||||| |||||||| ||||||  || | ||||||||| |||| |||||    
T  25802871 gatgttacaagtggtatcagagcagacctctcccagtatgatgtggttcggggatgaaccaagcg 25802807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 39653451 - 39653515
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | ||||| |||||||| |||||    
T  39653451 gatgttacaaatggtatcagagccgacctctcccagtacggtgtggttcgaggacgaaccaagcg 39653515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20057578 - 20057514
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| |||||||  | | |||||||||||||| |||||    
T  20057578 gatgttacaaatggtatcagagcagacctctcccagtacggtgtggttcggggacgaaccaagcg 20057514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20054395 - 20054331
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  20054395 gatgttacaaatggtatcagagccgacctctcccagtacggtgtggttcggggacgaaccaagcg 20054331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20054851 - 20054787
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  20054851 gatgttacaaatggtatcagagccgacctctcccagtacagtgtggttcggggacgaaccaagcg 20054787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20055307 - 20055243
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  20055307 gatgttacaaatggtatcagagccgacctctcccagtacggtgtggttcggggacgaaccaagcg 20055243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20055763 - 20055699
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  20055763 gatgttacaaatggtatcagagccgacctctcccagtacagtgtggttcggggacgaaccaagcg 20055699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20056219 - 20056155
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | |||||||||||||| |||||    
T  20056219 gatgttacaaatggtatcagagccgacctctcccagtacagtgtggttcggggacgaaccaagcg 20056155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 31822978 - 31822914
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||| || |||| |||||||||| ||||| || | |||||||||||||| |||||    
T  31822978 gatgttacaaatggcattagagcagacctcttcaagtacgatgtggttcggggacgaaccaagcg 31822914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 43057371 - 43057315
Alignment:
Q  164 aaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||| |||||||| ||||||| || | |||||||||||||| |||||    
T  43057371 aaatggtatcagagcagacctctcccagtacgatgtggttcggggacgaaccaagcg 43057315  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 220
Target Start/End: Complemental strand, 50002586 - 50002502
Alignment:
Q  136 caatcttgaaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||| ||||||||| ||  |||||||||||||||||||||| | || ||| ||||||| || | ||||| |||||||| |||||    
T  50002586 caatcctgaaagtcgtctaggatgttacaaatggtatcagagcatacatctcccagtacgatgtggttcgaggacgaaccaagcg 50002502  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 35759923 - 35759860
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagc 219  Q
    |||||||||||||||||||||| |||||||| ||||||| || | ||||| |||| ||| ||||    
T  35759923 gatgttacaaatggtatcagagcagacctctcccagtacgatgtggttcgaggactaaccaagc 35759860  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 30873045 - 30872975
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtag 93  Q
    ||||||||| ||||||| |||||||||||| ||||| |  |||||||||||| |  |||||||||| ||||    
T  30873045 tggttgaaggaagacttttaagaattgtttgatactacctatatcaacaagatgcatcttctttttggtag 30872975  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 2739583 - 2739639
Alignment:
Q  33 aagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttttt 89  Q
    |||||||||||||||||||||  ||| || |||||||||| | || |||||||||||    
T  2739583 aagacttataagaattgtttagcactacatatatcaacaatatgtatcttctttttt 2739639  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20056675 - 20056611
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | ||||| |||||||| |||||    
T  20056675 gatgttacaaatggtatcagagccgacctctcccagtacagtgtggttcgaggacgaaccaagcg 20056611  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 20057122 - 20057058
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    ||||||||||||||||||||||  ||||||| |||||||  | | ||||| |||||||| |||||    
T  20057122 gatgttacaaatggtatcagagccgacctctcccagtacagtgtggttcgaggacgaaccaagcg 20057058  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 35168293 - 35168361
Alignment:
Q  144 aaagtcgactgagatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacga 212  Q
    ||||||| |||||||||||||| ||||||||||| ||| ||||  |||||| || | ||||| ||||||    
T  35168293 aaagtcgtctgagatgttacaagtggtatcagagcagatctctctcagtacgatgttgttcgaggacga 35168361  T

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Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 162993 - 162929
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||||| |||||||| ||||||| ||   ||||| |||||||| |||||    
T  162993 gatgttacaaatggtatcagagcagacctctcccagtacgatgaggttcgaggacgaaccaagcg 162929  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 33174789 - 33174853
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||| ||||||||||||||| | ||||||||||||||  | | |||||||||||||| |||||    
T  33174789 gatgttgcaaatggtatcagagcaaacctcttccagtacgttgtggttcggggacgaaccaagcg 33174853  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 1707095 - 1707166
Alignment:
Q  26 ttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttcttttttgtagccca 97  Q
    |||||| ||||||||||||||||||||  |||| |  |||||||||||| |  |||||||||| ||||||||    
T  1707095 ttgaaggaagacttataagaattgtttggtactacctatatcaacaagatgcatcttctttttggtagccca 1707166  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 30966521 - 30966579
Alignment:
Q  156 gatgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    ||||||| |||||||||||||| |||||||| ||||||| || | ||||| ||||||||    
T  30966521 gatgttagaaatggtatcagagcagacctctcccagtacgatgtggttcgaggacgaac 30966579  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 52
Target Start/End: Complemental strand, 18448013 - 18447984
Alignment:
Q  23 tggttgaagtaagacttataagaattgttt 52  Q
    ||||||||||||||||||||||||||||||    
T  18448013 tggttgaagtaagacttataagaattgttt 18447984  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 245372 - 245434
Alignment:
Q  158 tgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaacgaagcg 220  Q
    |||||||||||||||||||| |||| ||| ||||||| || | ||||| |||||||| |||||    
T  245372 tgttacaaatggtatcagagcagacttctcccagtacaatgtggttcgaggacgaaccaagcg 245434  T

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Target: scaffold0442 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 2336 - 2393
Alignment:
Q  157 atgttacaaatggtatcagagaagacctcttccagtactatatagttcggggacgaac 214  Q
    |||||||||||||||| |||| | ||||||||||||||  | | ||||||||||||||    
T  2336 atgttacaaatggtataagagcatacctcttccagtacggtgtggttcggggacgaac 2393  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 18227 - 18178
Alignment:
Q  25 gttgaagtaagacttataagaattgtttaatactgcacatatcaacaaga 74  Q
    ||||||| |||||||||||||||||||| ||||| |  ||||||||||||    
T  18227 gttgaaggaagacttataagaattgtttgatactacctatatcaacaaga 18178  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 107558 - 107494
Alignment:
Q  23 tggttgaagtaagacttataagaattgtttaatactgcacatatcaacaagacgtgtcttctttt 87  Q
    ||||||||| ||| |||||||||||||||| ||||| |  |||||||||||| |  |||||||||    
T  107558 tggttgaaggaaggcttataagaattgtttgatactaccaatatcaacaagatgcatcttctttt 107494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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