View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_high_5 (Length: 377)
Name: NF6877_high_5
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 26931582 - 26931856
Alignment:
| Q |
19 |
agtgaaacagttagataattatggaatggaatggaaacacaagaagctttgttcctcaaccagagtcttccttaagctttctctacaactataaccaatg |
118 |
Q |
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| T |
26931582 |
agtgaaacagttagataattatggaatggaatggaaacacaagaagttttgttcctcaaccagagtcttccttaagcttcctctacaactacaaccaatg |
26931681 |
T |
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| Q |
119 |
ctcatatcaaggtaaaaattatcatcacaagtcacaacactagctactctaatgcattcatctttttatcatcataacattgcaccttgtaacttctaga |
218 |
Q |
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| T |
26931682 |
ctcatatcaaggtaaaaattatcatcacaagtcacaacactagctactctaatgcattcatctttttatcatcataacattgcacctagtaacttctaga |
26931781 |
T |
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| Q |
219 |
atgtaatttagtaaccctatatttaaacttatgactaaattaattatatatattttctgtccaaccatgcatatatag |
296 |
Q |
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| T |
26931782 |
atgtaatttagtaaccctatatttaaacttacgactaaat---ttatatatattttctgtccaaccatgcatatatag |
26931856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 26931894 - 26931922
Alignment:
| Q |
332 |
cttggtcaacattcattcaaaatttacgt |
360 |
Q |
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| T |
26931894 |
cttggtcaacattcattcaaaatttacgt |
26931922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 41796359 - 41796285
Alignment:
| Q |
39 |
atggaatggaatggaaacacaagaagctttgttcctcaaccagagtcttccttaagctttctctacaactataac |
113 |
Q |
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| T |
41796359 |
atggattggaatgagagcacaagaccctttgttcctcatactgagtcttccttaagcttcttctacaactataac |
41796285 |
T |
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