View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6877_high_7 (Length: 338)
Name: NF6877_high_7
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 44455810 - 44455490
Alignment:
| Q |
18 |
tatactaccgtgtcatattaatgtcacattagcaaaatgagtgtcactttatgttttcaatacaccattaattattttatggagggaagacccaactcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44455810 |
tatactaccgtgtcatattaatgtcacattagcaaaatgagtgtcactttatgttttcaatacatcattaattattttatggagggaagacccaactcag |
44455711 |
T |
|
| Q |
118 |
tccctcacaattttctcaatgctcaactcagtccctaacnnnnnnntaaacctaaattaatcactgacattttcagattggagacaaatgaggccctctg |
217 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
44455710 |
tccctcacaattttctggctgcacaactcagtccctaacaaaaaaataaacctaaattaatcactgacatttttagattggagacaaatgaagccctctg |
44455611 |
T |
|
| Q |
218 |
atattatgagttagtgactaattcgtcctcagtgtgaaaatgtcagagactaatttgcgatcattttttgtcaaatagtgatttggaccgcgagaaaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44455610 |
atattatgagttagtgactaattcgtcctcagtgtgaaaatgtcagagactaatttgcgatcattttttgtcaaatagtgatttggaccgcgagaaaatt |
44455511 |
T |
|
| Q |
318 |
gtgagctctattttatttcat |
338 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
44455510 |
gtgaactctattttatttcat |
44455490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 32358560 - 32358652
Alignment:
| Q |
182 |
tgacattttcagattggagacaaatgaggccctctgatattatgagttagtgactaattcgtcctcagtgtgaaaatgtcagagactaatttg |
274 |
Q |
| |
|
||||||||||| ||||| ||||||| || ||||||| ||| ||||| | |||||||| | | ||||||| ||||||| || |||||||||| |
|
|
| T |
32358560 |
tgacattttcaaattggggacaaataagtccctctgttataatgagccggggactaatttgccttcagtgtaaaaatgttagcgactaatttg |
32358652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University