View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6877_high_8 (Length: 285)
Name: NF6877_high_8
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_high_8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 2691295 - 2691544
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
2691295 |
caactcaaattgtccagcctcaaaagcataattaaaaattccacaaaacttgagatcctttttcttagtgatgtgacaatttcatctactttaccagaca |
2691394 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2691395 |
cactcacaaatttaacatcattgaaagaactatctctatacaattcggatttgtatggtgaatttccagttggagtatttcatcttccaaacttgaaagt |
2691494 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
2691495 |
tctagatttgagatataatcaaaatctcaatggtagtttgcctgagtttc |
2691544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2066572 - 2066323
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||| | |
|
|
| T |
2066572 |
caactcaaattatccagtctcaaaagcataattcaaaactcaacaaaacttgagaccctttttcttagttatgtaacaatttcatctactttaccagata |
2066473 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||||||| || ||||||| || ||||||||||||||||| |||||| |||||||||||||||||||| || |
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|
| T |
2066472 |
cactcgcaaatctaacttcattgaaaaaactatctctacacaattctgaattgtatggtgaatttcctgttggagtatttcatcttccaaacttggaata |
2066373 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| |||||||||| ||||| |||||||||||||||||| |||||||||| |
|
|
| T |
2066372 |
tctggatttgagatttaatctaaatctcaatggtagttttcccgagtttc |
2066323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2114775 - 2114526
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||||||||||||||| |||||| |||| ||||||||||||| ||| |
|
|
| T |
2114775 |
caactcaaattgtccattctcaaaagcataattcaaaactcaacaaaactcgagatcctttttcttagttttgtgactatttcatctactttaccaaaca |
2114676 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||||||| |||| || |||||| ||||||| || |||||||| || ||||||| ||||||||||||||| |||| |||||||||||||||||| | |
|
|
| T |
2114675 |
cactcacaaatctaacttcgttgaaaaaactatctctttacaattctgagctgtatggcgaatttccagttggagtattacatcttccaaacttgaaaat |
2114576 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
| | |||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2114575 |
tttggatttgggatataatccaaatctcaatggtagtttgcctgagtttc |
2114526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2126665 - 2126416
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||| ||||||| |||| ||||||| ||||||||||||||| | |
|
|
| T |
2126665 |
caactcaaattatccagtctcaaaagcataattcaaaactcaacaaaacttgagacccttcatcttagtcatgtaacaatttcatctactttaccagata |
2126566 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||||||| |||| || ||||||| ||| || || |||||||| || |||||||| || |||||||||||| |||||||||||||||||||| || | |
|
|
| T |
2126565 |
cactcacaaatctaacttcgttgaaagcactgtctctatacaattctgaattgtatggagagtttccagttggagtatttcatcttccaaacttggaact |
2126466 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2126465 |
tctggatttgagatataatccaaatctcaatggtagtttgcctgagtttc |
2126416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2139268 - 2139019
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||| | |
|
|
| T |
2139268 |
caactcaaattatccagtctcaaaagcataattcaaaactcaacaaaacttgagaccctttttcttagttatgtaacaatttcatctactttaccagata |
2139169 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||| ||||| |||| ||||||||| ||||| | || ||||||| || ||||||||||||||||| |||||| |||||||||||||||||||| || |
|
|
| T |
2139168 |
cactcgcaaatctaacttcattgaaaaaactaactctacacaattctgaattgtatggtgaatttcctgttggagtatttcatcttccaaacttggaata |
2139069 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
2139068 |
tctggatttgagatataatccaaatctcaatggaagtttacccgagtttc |
2139019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 2245120 - 2245369
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||||||| |||||| |||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
2245120 |
caactcaaattgtctagtctcagaagcataattcaaaactcaacaaaaattgagatcctttttcttagttatgtgactatttcatctactttaccagaca |
2245219 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||||||| |||| || ||||||| ||| || || |||||||| || |||||||| || |||||||||||| |||||||||||||||||||| || | |
|
|
| T |
2245220 |
cactcacaaatctaacttcgttgaaagcactgtctctatacaattctgaattgtatggagagtttccagttggagtatttcatcttccaaacttggaact |
2245319 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
2245320 |
tctggatttgggatataattcaaatctcaatggtagtttgcctgagtttc |
2245369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2099384 - 2099135
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||| | |
|
|
| T |
2099384 |
caactcaaattgtctagtctcagaagcataattcaaaactcaacaaaaattgagatcctttttcttagttttgtgacaatttcatctactttaccagaga |
2099285 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||||||| |||| || ||||||| |||||| || |||||||| || |||||||| | ||||| |||||| |||||||||||||||||||| || | |
|
|
| T |
2099284 |
cactcacaaatctaacttcgttgaaagcactatctctatacaattctgaattgtatggagcgtttccggttggagtatttcatcttccaaacttggaact |
2099185 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
2099184 |
tctggatttgagatataatccaaatctcaatggaagtttgcctgagtttc |
2099135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 2136018 - 2135771
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| ||||||| |||||| |||||||||||||||||||| ||| || |||| ||||||||||||||||| |
|
|
| T |
2136018 |
caactcaaattgtctagtctcagaagcataattcaaaactcaacaaaaattgagatcctttttcttagttttgtaactatttcatctactttaccagaca |
2135919 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||| ||| |||| |||| ||| ||||||| || |||||||| || |||||||||| ||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
2135918 |
cactcacgaatctaacttcataaaaa-aactatctctttacaattctgaattgtatggtgcatttccagttggagtatttcatcttccaaacttggaact |
2135820 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagttt |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
2135819 |
tctagatttgagatataatccaaatctcaatggtagattgcctgagttt |
2135771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 2073679 - 2073430
Alignment:
| Q |
19 |
caactcaaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagaca |
118 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| ||||| ||||||| ||| ||||||| ||||| ||||||||| | |
|
|
| T |
2073679 |
caactcaaattatccagtctcaaaagcataattcaaaactcaacaaaacttgagaccctttatcttagttctgtaacaatttcatctaatttaccagata |
2073580 |
T |
|
| Q |
119 |
cactcacaaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagt |
218 |
Q |
| |
|
||||||||||| |||| |||||||||| ||| || || |||||||| || ||||||||||||||||| |||||| |||||||||||||||||||| |||| |
|
|
| T |
2073579 |
cactcacaaatctaacttcattgaaagcactgtctctatacaattctgaattgtatggtgaatttcctgttggagtatttcatcttccaaacttggaagt |
2073480 |
T |
|
| Q |
219 |
tctagatttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
||| |||||||||| ||||||||||||||| || ||||| || ||||||| |
|
|
| T |
2073479 |
tctggatttgagatctaatccaaatctcaaaggaagtttacctgagtttc |
2073430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 25 - 257
Target Start/End: Complemental strand, 2057270 - 2057038
Alignment:
| Q |
25 |
aaattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagacacactca |
124 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| ||| | ||| | |||||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
2057270 |
aaattgtccagcctcaaaagcataattcaaaactcaacaaaacatgaaactcttctacttagttttgtgactatttcatctactttaccagacacactca |
2057171 |
T |
|
| Q |
125 |
caaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagttctaga |
224 |
Q |
| |
|
||||| |||| || |||||| ||||||| || |||||||| || ||||||||||||||||| |||||| |||||| ||||||||||||| || |||| || |
|
|
| T |
2057170 |
caaatctaacttcgttgaaaaaactatctctttacaattctgaattgtatggtgaatttcctgttggagtatttcgtcttccaaacttggaacttctgga |
2057071 |
T |
|
| Q |
225 |
tttgagatataatccaaatctcaatggtagttt |
257 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |
|
|
| T |
2057070 |
tttgggatataatcaaaatctcaatggtagttt |
2057038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 1696170 - 1696412
Alignment:
| Q |
26 |
aattgtccagcctcaaaagcataattaaaaactccacaaaacttgagatcctttttcttagtgatgtgacaattttatctactttaccagacacactcac |
125 |
Q |
| |
|
||||||| || |||| |||||| ||| |||||| |||||||| ||||| |||| ||||||| ||||||| |||| ||| |||||||| |||||||| | |
|
|
| T |
1696170 |
aattgtctagtctcagaagcatcattcaaaacttgacaaaactcgagatactttatcttagttatgtgactatttcatcaactttaccgaacacactctc |
1696269 |
T |
|
| Q |
126 |
aaatttaacatcattgaaagaactatcgctctacaattcggatttgtatggtgaatttccagttggaatatttcatcttccaaacttgaaagttctagat |
225 |
Q |
| |
|
|||| |||| || ||||||| |||||| || ||||||| || |||||||||||||||||||||||||| |||||||| || || |||| | | | ||| |
|
|
| T |
1696270 |
aaatctaacttcgttgaaagtactatctctttacaattgtgaattgtatggtgaatttccagttggaatttttcatctaccgaaattgagatatttggat |
1696369 |
T |
|
| Q |
226 |
ttgagatataatccaaatctcaatggtagtttgcccgagtttc |
268 |
Q |
| |
|
|||||| |||| | ||||||||| ||||| ||||||||||||| |
|
|
| T |
1696370 |
ttgagagataaccaaaatctcaaaggtaggttgcccgagtttc |
1696412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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