View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_low_10 (Length: 284)

Name: NF6877_low_10
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_low_10
NF6877_low_10
[»] chr8 (3 HSPs)
chr8 (170-284)||(41688974-41689085)
chr8 (13-54)||(19389286-19389327)
chr8 (125-165)||(3174436-3174476)
[»] chr4 (6 HSPs)
chr4 (125-165)||(10100202-10100242)
chr4 (11-54)||(35808370-35808413)
chr4 (13-54)||(51290522-51290563)
chr4 (13-54)||(55669831-55669872)
chr4 (10-54)||(26040333-26040377)
chr4 (125-165)||(33951680-33951720)
[»] chr3 (2 HSPs)
chr3 (11-50)||(25102296-25102335)
chr3 (125-165)||(46317466-46317506)
[»] chr2 (3 HSPs)
chr2 (11-54)||(765124-765167)
chr2 (12-54)||(39401510-39401552)
chr2 (125-165)||(39401623-39401663)
[»] chr1 (3 HSPs)
chr1 (12-54)||(34874659-34874701)
chr1 (10-54)||(47655341-47655385)
chr1 (125-165)||(50154453-50154493)
[»] scaffold0062 (3 HSPs)
scaffold0062 (10-54)||(16745-16789)
scaffold0062 (10-54)||(26913-26957)
scaffold0062 (10-54)||(37079-37123)
[»] chr7 (4 HSPs)
chr7 (13-53)||(5347948-5347988)
chr7 (10-50)||(36279215-36279255)
chr7 (14-54)||(48454799-48454839)
chr7 (125-165)||(49069535-49069575)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 284
Target Start/End: Complemental strand, 41689085 - 41688974
Alignment:
Q  170 caatggttagcaaaacccaataataaaaggggttttatcgaaagtttcatttcaaaatctcaaatctaagcagatatcattccatcaatgagaaacttga 269  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  41689085 caatgattagcaaaacccaataataaaaggggttttatcgaaagtttcatttcaaaatctcaaatc---gcagatatcattccatcaatgagaaacttga 41688989  T
Q  270 tgaatctaccattta 284  Q
    |||||||||||||||    
T  41688988 tgaatctaccattta 41688974  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 19389286 - 19389327
Alignment:
Q  13 aggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  19389286 aggagaatgctaaccattgcccttggggcattggataagggg 19389327  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 3174476 - 3174436
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    ||||||||||||||||| ||| |||||||||||| ||||||    
T  3174476 gttgaaaccaatacaaacatgctacttttggcttccttaac 3174436  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 10100202 - 10100242
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  10100202 gttgaaaccaatgcaaacatgttacttttggctttcttaac 10100242  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 35808370 - 35808413
Alignment:
Q  11 aaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  35808370 aaaggagaatgctaaccattgcccttggggcattggataagggg 35808413  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 51290563 - 51290522
Alignment:
Q  13 aggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||  |||| |||||||||||||||||    
T  51290563 aggagaatgctaaccattgtccttgggacattggataagggg 51290522  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 55669872 - 55669831
Alignment:
Q  13 aggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||||||||||||| ||||| || ||||||||||||||    
T  55669872 aggagaatgctaaccattgcccttggggcattggataagggg 55669831  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 26040333 - 26040377
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||||||||||||||||  |||| || ||||||||||||||    
T  26040333 taaaggagaatgctaaccattgtccttggggcattggataagggg 26040377  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 33951720 - 33951680
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    ||||||||||||||||| |||||| ||||||||| ||||||    
T  33951720 gttgaaaccaatacaaacatgttaattttggcttccttaac 33951680  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 25102296 - 25102335
Alignment:
Q  11 aaaggagaatgctaaccattacccttcggacattggataa 50  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  25102296 aaaggagaatgctaaccattgcccttgggacattggataa 25102335  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 46317506 - 46317466
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  46317506 gttgaaaccaatgcaaacatgttacttttggcttccttaac 46317466  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 765124 - 765167
Alignment:
Q  11 aaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  765124 aaaggagaatgctaaccattgcccttggggcattggataagggg 765167  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 39401510 - 39401552
Alignment:
Q  12 aaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  39401510 aaggagaatgctaaccattgcccttggggcattggataagggg 39401552  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Original strand, 39401623 - 39401663
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    ||||||||||||||||| ||| |||||||||||| ||||||    
T  39401623 gttgaaaccaatacaaacatgctacttttggcttccttaac 39401663  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 34874701 - 34874659
Alignment:
Q  12 aaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  34874701 aaggagaatgctaaccattgcccttggggcattggataagggg 34874659  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47655341 - 47655385
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||||| |||||  ||||||| ||||||||    
T  47655341 taaaggagaatgctaaccattgcccttaagacattgaataagggg 47655385  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 50154493 - 50154453
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    |||||||||||| |||| |||||||||||||||| ||||||    
T  50154493 gttgaaaccaatgcaaacatgttacttttggcttccttaac 50154453  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 16745 - 16789
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||||| ||| | || ||||||||||||||    
T  16745 taaaggagaatgctaaccattgcccatagggcattggataagggg 16789  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 26913 - 26957
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||||| ||| | || ||||||||||||||    
T  26913 taaaggagaatgctaaccattgcccatagggcattggataagggg 26957  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 37079 - 37123
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataagggg 54  Q
    ||||||||||||||||||||| ||| | || ||||||||||||||    
T  37079 taaaggagaatgctaaccattgcccatagggcattggataagggg 37123  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 5347948 - 5347988
Alignment:
Q  13 aggagaatgctaaccattacccttcggacattggataaggg 53  Q
    |||||||||||||||||||||||| || ||||| |||||||    
T  5347948 aggagaatgctaaccattacccttagggcattgaataaggg 5347988  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 36279255 - 36279215
Alignment:
Q  10 taaaggagaatgctaaccattacccttcggacattggataa 50  Q
    ||||||||||||||||||||||| ||| || ||||||||||    
T  36279255 taaaggagaatgctaaccattactcttggggcattggataa 36279215  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 48454799 - 48454839
Alignment:
Q  14 ggagaatgctaaccattacccttcggacattggataagggg 54  Q
    |||||||| |||||||||||||| || ||||||||||||||    
T  48454799 ggagaatgttaaccattacccttggggcattggataagggg 48454839  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 49069575 - 49069535
Alignment:
Q  125 gttgaaaccaatacaaaaatgttacttttggctttcttaac 165  Q
    ||||||||||||||||| ||||||||||||| || ||||||    
T  49069575 gttgaaaccaatacaaacatgttacttttggtttccttaac 49069535  T

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