View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_low_11 (Length: 283)

Name: NF6877_low_11
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_low_11
NF6877_low_11
[»] chr4 (8 HSPs)
chr4 (100-222)||(22174277-22174399)
chr4 (109-211)||(17409-17511)
chr4 (114-222)||(14926284-14926393)
chr4 (109-191)||(16719424-16719501)
chr4 (111-222)||(27342272-27342380)
chr4 (133-222)||(25985899-25985988)
chr4 (118-162)||(15579213-15579258)
chr4 (147-212)||(23995281-23995346)
[»] scaffold0019 (2 HSPs)
scaffold0019 (100-222)||(12791-12913)
scaffold0019 (100-222)||(22479-22601)
[»] chr2 (5 HSPs)
chr2 (101-222)||(22517500-22517624)
chr2 (106-202)||(22935543-22935641)
chr2 (106-202)||(22941507-22941605)
chr2 (106-202)||(22955402-22955500)
chr2 (126-198)||(29755580-29755652)
[»] chr8 (5 HSPs)
chr8 (101-203)||(27807137-27807239)
chr8 (149-211)||(20734538-20734600)
chr8 (106-202)||(21473994-21474092)
chr8 (149-208)||(20726643-20726702)
chr8 (149-208)||(20739541-20739600)
[»] scaffold0075 (1 HSPs)
scaffold0075 (109-211)||(57107-57209)
[»] scaffold0049 (1 HSPs)
scaffold0049 (109-212)||(22078-22182)
[»] scaffold0002 (2 HSPs)
scaffold0002 (106-222)||(297987-298103)
scaffold0002 (154-222)||(122720-122789)
[»] chr7 (5 HSPs)
chr7 (110-191)||(8911865-8911947)
chr7 (109-208)||(15765390-15765488)
chr7 (106-202)||(5647779-5647879)
chr7 (133-222)||(4892110-4892200)
chr7 (178-222)||(42016372-42016416)
[»] chr6 (8 HSPs)
chr6 (114-222)||(20047282-20047391)
chr6 (114-222)||(20039475-20039584)
chr6 (109-208)||(1550887-1550985)
chr6 (109-222)||(19170385-19170499)
chr6 (106-202)||(24142226-24142325)
chr6 (106-202)||(24148716-24148815)
chr6 (178-222)||(15664976-15665020)
chr6 (178-222)||(22073369-22073413)
[»] scaffold0551 (1 HSPs)
scaffold0551 (109-212)||(6651-6755)
[»] scaffold1855 (1 HSPs)
scaffold1855 (114-222)||(743-852)
[»] scaffold0032 (1 HSPs)
scaffold0032 (114-222)||(27683-27792)
[»] scaffold0573 (2 HSPs)
scaffold0573 (114-222)||(535-644)
scaffold0573 (114-222)||(1132-1241)
[»] chr5 (4 HSPs)
chr5 (114-222)||(25449167-25449276)
chr5 (109-202)||(23576038-23576130)
chr5 (106-202)||(26547122-26547221)
chr5 (114-192)||(29902598-29902676)
[»] scaffold1796 (1 HSPs)
scaffold1796 (109-208)||(431-529)
[»] scaffold0540 (1 HSPs)
scaffold0540 (109-208)||(1568-1663)
[»] scaffold0956 (1 HSPs)
scaffold0956 (109-191)||(521-598)
[»] scaffold0048 (1 HSPs)
scaffold0048 (111-222)||(3842-3950)
[»] chr3 (7 HSPs)
chr3 (111-222)||(4435110-4435218)
chr3 (111-222)||(4455901-4456009)
chr3 (111-222)||(30063393-30063501)
chr3 (154-222)||(18886679-18886748)
chr3 (154-222)||(18890921-18890990)
chr3 (154-222)||(18901104-18901173)
chr3 (109-208)||(49965872-49965968)
[»] scaffold0269 (1 HSPs)
scaffold0269 (115-208)||(13261-13350)
[»] scaffold0084 (1 HSPs)
scaffold0084 (115-193)||(35523-35598)
[»] scaffold0067 (1 HSPs)
scaffold0067 (178-211)||(43148-43181)
[»] chr1 (4 HSPs)
chr1 (133-222)||(39455679-39455770)
chr1 (161-222)||(6196560-6196622)
chr1 (100-222)||(6204411-6204529)
chr1 (178-222)||(20519661-20519705)
[»] scaffold0101 (1 HSPs)
scaffold0101 (100-222)||(15395-15513)
[»] scaffold0503 (2 HSPs)
scaffold0503 (169-222)||(546-600)
scaffold0503 (169-222)||(5113-5167)
[»] scaffold0050 (1 HSPs)
scaffold0050 (165-222)||(39693-39750)
[»] scaffold0458 (1 HSPs)
scaffold0458 (133-222)||(7947-8038)
[»] scaffold0378 (1 HSPs)
scaffold0378 (178-222)||(2271-2315)
[»] scaffold0014 (1 HSPs)
scaffold0014 (178-222)||(5082-5126)
[»] scaffold0243 (1 HSPs)
scaffold0243 (182-222)||(22300-22340)
[»] scaffold0037 (1 HSPs)
scaffold0037 (137-208)||(77545-77614)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 22174399 - 22174277
Alignment:
Q  100 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggt 199  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22174399 ctagaacatggatgttagaatgtaaattaggctttgatgtaattaatttatttattttcttgtcgtttattttctgcagaccttagaatgtataataggt 22174300  T
Q  200 tttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||||||||||||    
T  22174299 tttatgtaatagtcgtaggtgca 22174277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 17409 - 17511
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||||||| ||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||    
T  17409 ggatgttataatgtaaattaggctttgatgtaaataatttatttgttttcttgtcatttattttctgcagacattagaatgcataataggttttatgtaa 17508  T
Q  209 tag 211  Q
    |||    
T  17509 tag 17511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 14926284 - 14926393
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttattt--tcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaata 210  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||  ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||    
T  14926284 ttagaatgtacaataggcattgatgtaaataatttatttatttcttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaata 14926382  T
Q  211 gtcgtaggtgca 222  Q
    || |||||||||    
T  14926383 gt-gtaggtgca 14926393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 16719501 - 16719424
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgta 191  Q
    |||||||||||||||||||||| |||||||||| |||||||     ||||||||| |||||||||||| ||||||||||||||    
T  16719501 ggatgttagaatgtaaattaggctttgatgtaaataattta-----tttcttgtcatttattttctgcagaccttagaatgta 16719424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 27342380 - 27342272
Alignment:
Q  111 atgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggtttt-atgtaat 209  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||   |||||||| ||||||||| || ||| |||||||||||  ||| |||| |||||||    
T  27342380 atgttagaatgtaaactaggctta-atgtaaataatttattt---ttcttgtcatttattttccgcagactttagaatgtatcgtagttttttatgtaat 27342285  T
Q  210 agtcgtaggtgca 222  Q
    |||||||||||||    
T  27342284 agtcgtaggtgca 27342272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 25985899 - 25985988
Alignment:
Q  133 ttgatgtaattaatttatttattttcttgtcgtttatttt-ctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    ||||||||| |||||||||| |||||||||| |||||||| | || ||| ||| ||||||| ||||| |||||||||||||| |||||||||    
T  25985899 ttgatgtaaataatttattt-ttttcttgtcatttatttttccgcagacttta-aatgtatcataggcttttatgtaatagttgtaggtgca 25985988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 15579258 - 15579213
Alignment:
Q  118 aatgtaaattaggttttgatgtaattaatttattta-ttttcttgt 162  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||    
T  15579258 aatgtaaattaggctttgatgtaaataatttatttacttttcttgt 15579213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 23995346 - 23995281
Alignment:
Q  147 ttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaatagt 212  Q
    ||||||||||||||||| |||  ||||  | |||  ||||||||||||||||||| ||||||||||    
T  23995346 ttatttattttcttgtcattttatttccacggactatagaatgtataataggtttaatgtaatagt 23995281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 12913 - 12791
Alignment:
Q  100 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggt 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12913 ctagaacatggatcttagaatgtaaattaggttttgatgtaatttatttatttattttcttgtcgtttattttctgcagaccttagaatgtataataggt 12814  T
Q  200 tttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||||||||||||    
T  12813 tttatgtaatagtcgtaggtgca 12791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 22601 - 22479
Alignment:
Q  100 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  22601 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaattaatttattttcttgtcgtttattttctgcagaccttagaatgtataattggt 22502  T
Q  200 tttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||||||| ||||    
T  22501 tttatgtaatagtcgtagctgca 22479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 222
Target Start/End: Complemental strand, 22517624 - 22517500
Alignment:
Q  101 tagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttatt---ttctgccgaccttagaatgtataatag 197  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||   |||||| |||||||||||||| |||||    
T  22517624 tagaccatggatgttagaatgtaaattaggttttgatgtaaataatttatttattttcttgtcatttattttcttctgcagaccttagaatgta-aatag 22517526  T
Q  198 g-ttttatgtaatagtcgtaggtgca 222  Q
    | ||||||||||||||||||||||||    
T  22517525 gcttttatgtaatagtcgtaggtgca 22517500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 22935543 - 22935641
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta-ttttctgccgaccttagaatgtataataggtttt 202  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| |||| |||| ||| |||||||||||||| ||||||||||    
T  22935543 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgta-aataggtttt 22935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 22941507 - 22941605
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta-ttttctgccgaccttagaatgtataataggtttt 202  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| |||| |||| ||| |||||||||||||| ||||||||||    
T  22941507 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgta-aataggtttt 22941605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 22955402 - 22955500
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta-ttttctgccgaccttagaatgtataataggtttt 202  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| |||| |||| ||| |||||||||||||| ||||||||||    
T  22955402 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttatttttttgcagaccttagaatgta-aataggtttt 22955500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 29755580 - 29755652
Alignment:
Q  126 ttaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataatagg 198  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||||||| || |||| ||| ||||||||||||    
T  29755580 ttaggctttgatgtaaataatttatttattttcttgtcatttattttccgcagaccatagcatgtataatagg 29755652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 203
Target Start/End: Complemental strand, 27807239 - 27807137
Alignment:
Q  101 tagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggtt 200  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27807239 tagagcatggatgttagaatgtaaattaggctttgatgtaaataaattatttattttcttgtcatttattttctgcagaccttagaatgtataataggtt 27807140  T
Q  201 tta 203  Q
    |||    
T  27807139 tta 27807137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 20734538 - 20734600
Alignment:
Q  149 atttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaatag 211  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||    
T  20734538 atttattctcttgtcattcattttctgcagaccttagaatgtataataggttttatgtaatag 20734600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 21474092 - 21473994
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta-ttttctgccgaccttagaatgtataataggtttt 202  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  ||||||| || |||| |||| ||| |||||||||||||| ||||||||||    
T  21474092 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttatcatttatttttttgcagaccttagaatgta-aataggtttt 21473994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 20726643 - 20726702
Alignment:
Q  149 atttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||||||| |||||||||||    
T  20726643 atttattctcttgtcattcattttctgcagaccttagaatgtataatatgttttatgtaa 20726702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 20739541 - 20739600
Alignment:
Q  149 atttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    ||||||| ||||||| || ||||||||| ||||||||||||||||||| |||||||||||    
T  20739541 atttattctcttgtcattcattttctgcagaccttagaatgtataatatgttttatgtaa 20739600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 57107 - 57209
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||||||| ||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||    
T  57107 ggatgttataatgtaaattaggctttgatgtaaataatttatttgttttcttgtcatttattttctgcagacattagaatgcataataggttttatgtaa 57206  T
Q  209 tag 211  Q
    |||    
T  57207 tag 57209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 22182 - 22078
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttattta-ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgt 206  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||| |||| |||    
T  22182 ggatgttagaatgtaaattaggctttgatgtaaataatttatttacttttcttgtcatttattttctgcagaccttagaatgta-aataggattttttgt 22084  T
Q  207 aatagt 212  Q
    ||||||    
T  22083 aatagt 22078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 297987 - 298103
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta-ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-tttta 203  Q
    |||| ||||||||||||||||||||  ||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||| ||||     
T  297987 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttacttttcttgtcatttattttctgcagaccttagaatgta-aataggtttttt 298085  T
Q  204 tgtaatagtcgtaggtgca 222  Q
    ||||||||| |||||||||    
T  298086 tgtaatagt-gtaggtgca 298103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 122720 - 122789
Alignment:
Q  154 ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  122720 ttttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 122789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 8911947 - 8911865
Alignment:
Q  110 gatgttagaatgtaaattaggttttgatgtaattaatttattta-ttttcttgtcgtttattttctgccgaccttagaatgta 191  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  8911947 gatgttagaatgtaaattaggctttgatgtaaataatttatttacttttcttgtcatttattttctgcagaccttagaatgta 8911865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 15765488 - 15765390
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||| ||||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||| || |||||||||||||||| |||| || ||||||    
T  15765488 ggatattagaatgtaaattaggttttaatgtaaataattcatt-attttcttgtcatttattttccgcagaccttagaatgtatagtaggcttaatgtaa 15765390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 5647879 - 5647779
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta---ttttctgccgaccttagaatgtataataggtt 200  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| ||||   |||| ||| |||||||||||||| ||||||||    
T  5647879 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttatttttttttgcagaccttagaatgta-aataggtt 5647781  T
Q  201 tt 202  Q
    ||    
T  5647780 tt 5647779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 4892200 - 4892110
Alignment:
Q  133 ttgatgtaattaatttatttattttcttgtcgttta-ttttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    ||||||||| |||||||||| |||||||||| |||| ||||| || ||| ||||||||||| ||||| ||||||||||||||||||| ||||    
T  4892200 ttgatgtaaataatttattt-ttttcttgtcatttacttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtagatgca 4892110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 42016416 - 42016372
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  42016416 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 42016372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 20047391 - 20047282
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttatttt-cttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatag 211  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||| |||||||||||||    
T  20047391 ttagaatgtacaataggcattgatgtaaataatttatttatttttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaatag 20047293  T
Q  212 tcgtaggtgca 222  Q
    |||||||||||    
T  20047292 tcgtaggtgca 20047282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 20039584 - 20039475
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttatttt-cttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaatagt 212  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||| | | | ||||||||||||||    
T  20039584 ttagaatgtacaataggcattgatgtaaataatttatttatttttcttgtcatttattttctgcagaccttagaatgtaaattggcttttatgtaatagt 20039485  T
Q  213 cgtaggtgca 222  Q
    ||||||||||    
T  20039484 cgtaggtgca 20039475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 1550887 - 1550985
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||| ||||||||||||||||||||| |||||| ||||| ||| ||||||||||| ||||||||| || |||||||||||||||| |||| || ||||||    
T  1550887 ggatattagaatgtaaattaggttttaatgtaaataattcatt-attttcttgtcatttattttccgcagaccttagaatgtatagtaggcttaatgtaa 1550985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 19170385 - 19170499
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgttta-ttttctgccgaccttagaatgtataatagg-ttttatgt 206  Q
    |||| ||||||||||||||||| |||||||||| |||||| ||| |||||||||| |||| ||||| || ||| ||||||||||  ||||| ||||||||    
T  19170385 ggatattagaatgtaaattaggctttgatgtaaataatttgttt-ttttcttgtcatttatttttccgcagactttagaatgtaccataggcttttatgt 19170483  T
Q  207 aatagtcgtaggtgca 222  Q
    ||||||||||||||||    
T  19170484 aatagtcgtaggtgca 19170499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 24142325 - 24142226
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta--ttttctgccgaccttagaatgtataataggttt 201  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| ||||  |||| ||| |||||||||||||| |||||||||    
T  24142325 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgta-aataggttt 24142227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 24148815 - 24148716
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta--ttttctgccgaccttagaatgtataataggttt 201  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| ||||  |||| ||| |||||||||||||| |||||||||    
T  24148815 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgta-aataggttt 24148717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 15665020 - 15664976
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  15665020 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 15664976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 22073369 - 22073413
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  22073369 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 22073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 109 - 212
Target Start/End: Complemental strand, 6755 - 6651
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttattta-ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgt 206  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||| |||||||||||| |||||||||||||| |||||| |||| |||    
T  6755 ggatgttagaatgtaaattaggctttgatgtaaataatttacttacttttcttgtcatttattttctgcagaccttagaatgta-aataggattttttgt 6657  T
Q  207 aatagt 212  Q
    ||||||    
T  6656 aatagt 6651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1855 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1855
Description:

Target: scaffold1855; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 743 - 852
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttatttt-cttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatag 211  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||| |||||| |||||||||||||    
T  743 ttagaatgtacaataggcattgatgtaaataatttatttatttttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaatag 841  T
Q  212 tcgtaggtgca 222  Q
    |||||| ||||    
T  842 tcgtagatgca 852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 27792 - 27683
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttatttt-cttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatag 211  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||| |||||| |||||||||||| ||||||||| |||| |||||| |||||||||||||    
T  27792 ttagaatgtacaataggcattgatgtaaataatttatttatttttcttgtcatttattttctgcagaccttagagtgta-aataggcttttatgtaatag 27694  T
Q  212 tcgtaggtgca 222  Q
    |||||||||||    
T  27693 tcgtaggtgca 27683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 535 - 644
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttattt--tcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaata 210  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||  ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||    
T  535 ttagaatgtacaataggcattgatgtaaataatttatttatttcttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaata 633  T
Q  211 gtcgtaggtgca 222  Q
    || |||||||||    
T  634 gt-gtaggtgca 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 1132 - 1241
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttattt--tcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaata 210  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||  ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||    
T  1132 ttagaatgtacaataggcattgatgtaaataatttatttatttcttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaata 1230  T
Q  211 gtcgtaggtgca 222  Q
    || |||||||||    
T  1231 gt-gtaggtgca 1241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 25449276 - 25449167
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttattt--tcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaata 210  Q
    |||||||||| | ||||  ||||||||| ||||||||||||||  ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||    
T  25449276 ttagaatgtacaataggcattgatgtaaataatttatttatttcttcttgtcatttattttctgcagaccttagaatgta-aataggcttttatgtaata 25449178  T
Q  211 gtcgtaggtgca 222  Q
    || |||||||||    
T  25449177 gt-gtaggtgca 25449167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 23576130 - 23576038
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttattta-ttttcttgtcgtttattttctgccgaccttagaatgtataataggtttt 202  Q
    |||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| |||| |||||||  ||||||| ||||| ||||||||||    
T  23576130 ggatgttagaatgtaaattaggctttgatgtaaataatttatttacttttcttgtcattta-tttctgcataccttaggatgta-aataggtttt 23576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 26547221 - 26547122
Alignment:
Q  106 catggatgttagaatgtaaattaggttttgatgtaattaatttattta--ttttcttgtcgttta--ttttctgccgaccttagaatgtataataggttt 201  Q
    |||| ||||||||||||||||||||  ||||||||| |||||||||||  |||||||||| ||||  |||| ||| |||||||||||||| |||||||||    
T  26547221 catgcatgttagaatgtaaattaggccttgatgtaaataatttatttactttttcttgtcatttattttttttgcagaccttagaatgta-aataggttt 26547123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 29902598 - 29902676
Alignment:
Q  114 ttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtat 192  Q
    |||||||| |||||| | |||||||||| ||||| |||||| |||||||| |||||||||||| |||| ||| ||||||    
T  29902598 ttagaatgcaaattaagctttgatgtaaataattcatttatattcttgtcatttattttctgcagaccatagcatgtat 29902676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1796 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1796
Description:

Target: scaffold1796; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 431 - 529
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||| ||||||||||||||| ||||| |||||| | ||||||| ||||||||||| ||||||||| || |||||||||||||||| |||| || ||||||    
T  431 ggatattagaatgtaaattaagttttaatgtaaatgatttatt-attttcttgtcatttattttccgcagaccttagaatgtatagtaggcttaatgtaa 529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0540 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0540
Description:

Target: scaffold0540; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 1663 - 1568
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||    ||||||| ||||||||| || |||||||||||||||| |||| || ||||||    
T  1663 ggatattagaatgtaaattaggttttaatgtaaataatttattt----tcttgtcatttattttccgcagaccttagaatgtatagtaggcttaatgtaa 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0956 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0956
Description:

Target: scaffold0956; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 598 - 521
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgta 191  Q
    |||||||||||||||| ||||| |||||||||| |||||||     ||||||||| |||||||||||| ||||||||||||||    
T  598 ggatgttagaatgtaagttaggctttgatgtaaataattta-----tttcttgtcatttattttctgcagaccttagaatgta 521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 3950 - 3842
Alignment:
Q  111 atgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaat 209  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||   |||||||| ||||||||| || ||| ||||||||||| ||||| |||| ||||||    
T  3950 atgttagaatgtaaactaggctta-atgtaaataatttattt---ttcttgtcatttattttccgcagactttagaatgtatcataggcttttttgtaat 3855  T
Q  210 agtcgtaggtgca 222  Q
    |||||||||||||    
T  3854 agtcgtaggtgca 3842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 4435110 - 4435218
Alignment:
Q  111 atgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaat 209  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||   |||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||| |    
T  4435110 atgttagaatgtaaactaggctta-atgtaaataatttattt---ttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtagt 4435205  T
Q  210 agtcgtaggtgca 222  Q
    |||||||||||||    
T  4435206 agtcgtaggtgca 4435218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Original strand, 4455901 - 4456009
Alignment:
Q  111 atgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaat 209  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||   |||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||| |    
T  4455901 atgttagaatgtaaactaggctta-atgtaaataatttattt---ttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtagt 4455996  T
Q  210 agtcgtaggtgca 222  Q
    |||||||||||||    
T  4455997 agtcgtaggtgca 4456009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 30063501 - 30063393
Alignment:
Q  111 atgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaat 209  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||   |||||||| ||||||||| ||  || ||||||||||| ||||| |||||||||||    
T  30063501 atgttagaatgtaaactaggctta-atgtaaataatttattt---ttcttgtcatttattttccgcaaactttagaatgtatcataggcttttatgtaat 30063406  T
Q  210 agtcgtaggtgca 222  Q
    |||||||||||||    
T  30063405 agtcgtaggtgca 30063393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 18886748 - 18886679
Alignment:
Q  154 ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  18886748 ttttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 18886679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 18890990 - 18890921
Alignment:
Q  154 ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  18890990 ttttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 18890921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 18901173 - 18901104
Alignment:
Q  154 ttttcttgtcgtttattttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||| ||||||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  18901173 ttttcttgtcatttattttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 18901104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 208
Target Start/End: Complemental strand, 49965968 - 49965872
Alignment:
Q  109 ggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||| |||||||||||| |||  ||| |||||| |||||||||||||||   ||| ||||||||| ||  |||||||||||||||||||| || ||||||    
T  49965968 ggatattagaatgtaaactagactttaatgtaaataatttatttatttt---gtcctttattttccgcataccttagaatgtataataggcttaatgtaa 49965872  T

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Target: scaffold0269 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 13350 - 13261
Alignment:
Q  115 tagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    |||||||||||||||| |||||||||| ||     |||||||| ||||| |||||||||||| |||||||||||||| | |||| || ||||||    
T  13350 tagaatgtaaattaggctttgatgtaaata----ttttatttttttgtcatttattttctgcagaccttagaatgtaaactaggcttaatgtaa 13261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 35598 - 35523
Alignment:
Q  115 tagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtata 193  Q
    ||||||||||| |||| ||| |||||| ||||||||||   || ||||| |||||||||||| ||||||||||||||||    
T  35598 tagaatgtaaactaggctttaatgtaaataatttattt---ttattgtcatttattttctgcagaccttagaatgtata 35523  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 43181 - 43148
Alignment:
Q  178 gaccttagaatgtataataggttttatgtaatag 211  Q
    ||||||||||||||||||||||||||||||||||    
T  43181 gaccttagaatgtataataggttttatgtaatag 43148  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 39455679 - 39455770
Alignment:
Q  133 ttgatgtaattaatttatttattttcttgtcgtttatttt-ctgccgaccttagaatgtataatagg--ttttatgtaatagtcgtaggtgca 222  Q
    ||||||||| ||||||||||  ||| ||||| |||||||| | || ||| ||||||||||| |||||  ||||||||||||||||||||||||    
T  39455679 ttgatgtaaataatttattttcttt-ttgtcatttatttttccgcagactttagaatgtatcataggccttttatgtaatagtcgtaggtgca 39455770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 6196622 - 6196560
Alignment:
Q  161 gtcgtttattttct-gccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    ||||||||||| || || |||||||||||||| |||||| ||||||||||||||||||||||||    
T  6196622 gtcgtttatttcctcgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 6196560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 6204529 - 6204411
Alignment:
Q  100 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttct-gccgaccttagaatgtataatagg 198  Q
    ||||| || |||| ||||||||||| |||||| || |||||| ||||||   ||||| |  ||| ||||||| || || |||||||||||||| ||||||    
T  6204529 ctagagcaaggatattagaatgtaatttaggtcttcatgtaaataattt---tatttcc--gtcttttatttcctcgcagaccttagaatgta-aatagg 6204436  T
Q  199 -ttttatgtaatagtcgtaggtgca 222  Q
     ||||||||||||||||||||||||    
T  6204435 cttttatgtaatagtcgtaggtgca 6204411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 20519661 - 20519705
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  20519661 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 20519705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 15513 - 15395
Alignment:
Q  100 ctagaacatggatgttagaatgtaaattaggttttgatgtaattaatttatttattttcttgtcgtttattttct-gccgaccttagaatgtataatagg 198  Q
    ||||| || |||| ||||||||||| |||||| || |||||| ||||||   ||||| |  ||||||||||  || || |||||||||||||| ||||||    
T  15513 ctagagcaaggatattagaatgtaatttaggtcttaatgtaaataattt---tatttcc--gtcgtttattccctcgcagaccttagaatgta-aatagg 15420  T
Q  199 -ttttatgtaatagtcgtaggtgca 222  Q
     ||||||||||||||||||||||||    
T  15419 cttttatgtaatagtcgtaggtgca 15395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 600 - 546
Alignment:
Q  169 ttttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    ||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  600 ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 5167 - 5113
Alignment:
Q  169 ttttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    ||||| || ||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  5167 ttttccgcagactttagaatgtatcataggcttttatgtaatagtcgtaggtgca 5113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 39750 - 39693
Alignment:
Q  165 tttattttctgccgaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||  ||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  39750 tttatttattgcagaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 39693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0458 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 8038 - 7947
Alignment:
Q  133 ttgatgtaattaatttatttattttcttgtcgtttatttt-ctgccgaccttagaatgtataataggt--tttatgtaatagtcgtaggtgca 222  Q
    ||||||||| ||||||||||  ||| ||||| |||||||| | || ||| ||||||||||| |||||   |||||||||||||||||||||||    
T  8038 ttgatgtaaataatttattttcttt-ttgtcatttatttttccgcagactttagaatgtatcataggccatttatgtaatagtcgtaggtgca 7947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0378 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0378
Description:

Target: scaffold0378; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 2271 - 2315
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  2271 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 2315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 5082 - 5126
Alignment:
Q  178 gaccttagaatgtataatagg-ttttatgtaatagtcgtaggtgca 222  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||    
T  5082 gaccttagaatgta-aataggcttttatgtaatagtcgtaggtgca 5126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 22300 - 22340
Alignment:
Q  182 ttagaatgtataataggttttatgtaatagtcgtaggtgca 222  Q
    ||||||||||||||||| || ||||||||||| ||||||||    
T  22300 ttagaatgtataataggcttaatgtaatagtcttaggtgca 22340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 77614 - 77545
Alignment:
Q  137 tgtaattaatttatttattttcttgtcgtttattttctgccgaccttagaatgtataataggttttatgtaa 208  Q
    ||||| ||||||||||  ||||||||| ||||||||| |  |||||||||||||||| |||| || ||||||    
T  77614 tgtaaataatttattt--tttcttgtcatttattttccgtagaccttagaatgtatagtaggcttaatgtaa 77545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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