View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_low_12 (Length: 250)
Name: NF6877_low_12
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 1559982 - 1560195
Alignment:
| Q |
20 |
ggtgtccgaaattggatcctctcaatcgccatatgcggtatatattagtctgtggacatgtgattggatgttattgggtaggatactacttctcactttg |
119 |
Q |
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| T |
1559982 |
ggtgtccgaaattggatcctctcaatcgccatatgcggtatatattagtctgtggacatgtgattggatgttattgggtaggatactacttctcactttg |
1560081 |
T |
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| Q |
120 |
tggtaacaatgcgtagttaccaactctcctatgtttatgcaaattggattggataaaaagaatgagaaatattgtttatagcaatacacaaaaaagaaat |
219 |
Q |
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| T |
1560082 |
tggtaacaatgcgtagttaccaactctcctatgtttatgcaaattggattggataaaaagaatgagaaatattgtttatagcaatacacaaaaaagaaat |
1560181 |
T |
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| Q |
220 |
aaagaatacaatat |
233 |
Q |
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|||||||||||||| |
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| T |
1560182 |
aaagaatacaatat |
1560195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 2089886 - 2090104
Alignment:
| Q |
18 |
tgggtgtccgaaattggatcctctcaatcgccatatgcggtatatattagtctgtggacatgtgattggatgttattgggtaggatactacttctcactt |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||| |
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| T |
2089886 |
tgggtgtccgaaattggatcctctcaatcaccatatgcggtatatattagtgtgtgaacatgtgattggatatttttgggtaggatactacttctcactt |
2089985 |
T |
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| Q |
118 |
tgtggtaacaatgc---gtagttaccaactctcctatgtttatgcaaattggattggataaaaagaatgagaaatattgtttatagcaatacacaaaaaa |
214 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
2089986 |
tgtggtaacaatgcttggtagttaccaactctcccatgtttatgcaaattggattcgataaaaagaatgagaaatgttgtttatagcaatacactaaaaa |
2090085 |
T |
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| Q |
215 |
gaaataaagaatacaatat |
233 |
Q |
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||||||||||||||||||| |
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| T |
2090086 |
gaaataaagaatacaatat |
2090104 |
T |
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