View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6877_low_14 (Length: 248)

Name: NF6877_low_14
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6877_low_14
NF6877_low_14
[»] chr7 (12 HSPs)
chr7 (6-248)||(2691067-2691309)
chr7 (13-247)||(2136005-2136239)
chr7 (13-247)||(2099371-2099605)
chr7 (13-195)||(2126683-2126865)
chr7 (13-195)||(2073697-2073879)
chr7 (13-247)||(2244899-2245133)
chr7 (13-192)||(2066599-2066778)
chr7 (13-192)||(2114796-2114975)
chr7 (13-186)||(2139298-2139471)
chr7 (13-118)||(2057556-2057661)
chr7 (13-117)||(1695942-1696046)
chr7 (115-248)||(2057262-2057398)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 248
Target Start/End: Original strand, 2691067 - 2691309
Alignment:
Q  6 tttcgtgttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatc 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||| |||||||||| ||    
T  2691067 tttcgtcttgtgcaccttcgagttcttgatctttctgataataacttcaattactctaaaatcccgtccaagataggtatgctttcgcaactaaaatttc 2691166  T
Q  106 tgaacctttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaag 205  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||    
T  2691167 tgaacctttctcttagcttattctctggagaaattccaccacaaatttcacagttgtccaagctgcagtctcttgatctaggcttaagagatatagcaag 2691266  T
Q  206 tcctaaaggtagtgcagttaatctgttgcaactcaaattgtcc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2691267 tcctaaaggtagtgcagttaatctgttgcaactcaaattgtcc 2691309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2136239 - 2136005
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  | ||||||||| |||||||||||||||||| | |||||||    
T  2136239 ttgtgcaccttcgagttcttgatctatctgataataacttcaattactctaaaatccctaccaagataggtgagctttcacaactaaaatttttgaacct 2136140  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    |||||| | |||||| |||||||||||||||  ||||||||| |||||||||||||||  ||||||||||||||| ||||||| ||||| | ||||||||    
T  2136139 ttctcttaacttattttctggagaaattccacgacaagtttcccagttgtccaagttgttgtctcttgatctaggtttcagagctatagtacgtcctaaa 2136040  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2136039 ggtagtacatccaatttgttgcaactcaaattgtc 2136005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 2099605 - 2099371
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||| ||||||||||    
T  2099605 ttgtacaccttcgagttcttgatctttctgacaatgacttcaattactctccaatcccgtccaagataggtcagctttcacaattaaaacatctgaacct 2099506  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    ||| || |||||||| ||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||||||||| ||||| ||||| |  |||||||    
T  2099505 ttcccttagcttattttctggagaaattccaccacatgtttcacagttgtcaaagttgttgtctcttgatctaggctacagagctatagtacatcctaaa 2099406  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2099405 ggtagtacatccaatttgttgcaactcaaattgtc 2099371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2126865 - 2126683
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||||||    
T  2126865 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggtgagctttcacaattaaaacatctgaacct 2126766  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagag 195  Q
    ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2126765 ttccctgagcttcttttctggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctaggcttcagag 2126683  T

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Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 2073879 - 2073697
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||| ||||||||||| ||||| ||||||| ||    
T  2073879 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggtgagctttcacaattaaaacatctgaaact 2073780  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagag 195  Q
    ||| |||||||| || ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2073779 ttccctgagcttcttttctggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctaggcttcagag 2073697  T

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Target: chr7; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 2244899 - 2245133
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||| ||||||||| | |||||||||| ||| ||  ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  2244899 ttgtacaccttcgattacttgatctttttgacaacgacttcaattactctcaaatcccgtccaagataggtgagctttcacaactaaaatatctaaacct 2244998  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttcagagatatagcaagtcctaaa 212  Q
    |||| | |||||||| || ||||||||||||  |||| ||||||||||||||||||||  ||||||||||||||| ||||||| ||||| | ||||||||    
T  2244999 ttctattagcttattttcaggagaaattccacaacaattttcacagttgtccaagttgttgtctcttgatctaggtttcagagctatagtacgtcctaaa 2245098  T
Q  213 ggtagtgcagttaatctgttgcaactcaaattgtc 247  Q
    |||||| ||   ||| |||||||||||||||||||    
T  2245099 ggtagtacatccaatttgttgcaactcaaattgtc 2245133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2066778 - 2066599
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||    
T  2066778 ttgtgcaccttcgagttcttgatctttccgacaatgacttcaattactctcaaatcccatccaagataggtaagctttcacaactaaaatttctgaacct 2066679  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttca 192  Q
    |||||  || ||||| || |||||||||||| |||||||||||||| |||||||||||  ||||||||||||||||||||    
T  2066678 ttctcgtagtttattttccggagaaattccaccacaagtttcacagctgtccaagttgttgtctcttgatctaggcttca 2066599  T

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Target: chr7; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 2114975 - 2114796
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||  |||||||||||||||||| |||||||||    
T  2114975 ttgtgcaccttcgagttcttgatctttctgacaatgacttcaattactctcaaatcccatccaagataggcgagctttcacaactaaaatttctgaacct 2114876  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctaggcttca 192  Q
    |||||  || ||||| || |||||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  2114875 ttctcgtagtttattttccggagaaattccaccacaagtttcacagttgtctaagttgttgtctcttgatctaggcttca 2114796  T

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Target: chr7; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 186
Target Start/End: Complemental strand, 2139471 - 2139298
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||||||    
T  2139471 ttgtgcatcttcgagttcttgatctttctgacaatgacttcaattactctcaaattccatccaagataggtaagctttcacaactaaaatttctgaacct 2139372  T
Q  113 ttctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatctag 186  Q
    |||||  || ||||| || |||||||||||| ||||||||||||||||||||||||||  ||||||||||||||    
T  2139371 ttctcgtagtttattttccggagaaattccaccacaagtttcacagttgtccaagttgttgtctcttgatctag 2139298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 2057661 - 2057556
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||| |||||||||||||||||| ||| |||||||||||||  |||||||||||||||||||| ||||| ||| |||||||| |||||||||    
T  2057661 ttgtgcaccttcaagttcttgatctttctgacaatgacttcaattactccaaaatcccgtctaagataggtgagcttccacgactaaaatttctgaacct 2057562  T
Q  113 ttctct 118  Q
    ||||||    
T  2057561 ttctct 2057556  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 1695942 - 1696046
Alignment:
Q  13 ttgtgcaccttcgagttcttgatctttctgataataacttcaattactctcaaatcccgtctaagataggtaagctttcacaactaaaatatctgaacct 112  Q
    |||||||||||||||||||||||||| | |||||| | ||||| ||||||| |||||| |||| ||||||  ||||||| ||  |||||||| | |||||    
T  1695942 ttgtgcaccttcgagttcttgatcttgcagataatgatttcaaatactctcgaatcccatctaggataggcgagctttcgcagataaaatatttaaacct 1696041  T
Q  113 ttctc 117  Q
    |||||    
T  1696042 ttctc 1696046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 2057398 - 2057262
Alignment:
Q  115 ctctgagcttattgtctggagaaattccatcacaagtttcacagttgtccaagttgcggtctcttgatct---aggcttcagagatatagcaagtcctaa 211  Q
    |||| |||||||| ||| ||||||||||| |||||||||||||||||| || |||||  |||||||||||   |||||| |||| | ||| |  ||||||    
T  2057398 ctcttagcttattttctagagaaattccaccacaagtttcacagttgttcatgttgctctctcttgatcttggaggctttagagctgtagtacatcctaa 2057299  T
Q  212 aggtagtgcagttaatctgttgcaactcaaattgtcc 248  Q
    ||||||| ||   |||||||||||| | |||||||||    
T  2057298 aggtagtacatccaatctgttgcaattaaaattgtcc 2057262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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