View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_low_2 (Length: 595)
Name: NF6877_low_2
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 24 - 547
Target Start/End: Complemental strand, 25525056 - 25524532
Alignment:
| Q |
24 |
ggaccttggtctgtagaaatagttttctttacatatttaggacttgtcaggtactt--ataaacttgattaaatatttctgcacttacactttcttcagt |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525056 |
ggaccttggtctgtagaaatagttttctttacatatttaggacttgtcaggtacgtgtataaacttgattaaatatttctgcacttacactttcttcagt |
25524957 |
T |
|
| Q |
122 |
aaattgtttttagtaactttttgatggtttcttccagtaatttgatgtttgacaaatttcttacgttgtcaaaggttatacttgttggcttgatcgcatc |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
25524956 |
aaattgtttttagtaactttttgatggtttcttccagtaatttgatgtttgacaaatttcttacgctgtcaa-ggttatacttgttggcttgatcgcatc |
25524858 |
T |
|
| Q |
222 |
cacgatgtaccttcacttaaaaacttatcctaagaacgaactttcggggaatctctacatgtctgcactattttatgcattggtgcacatgctgtttaat |
321 |
Q |
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||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524857 |
cacaatgtaccttcacgtaaaaacttatcctaagaacgaactttcggggaatctctacatgtctgcactattttatgcattggtgcacatgctgtttaat |
25524758 |
T |
|
| Q |
322 |
gggactactgagttgtcacttttgatatttcgtcttcctgtcttctataaacaaagaggcaatttattttatccggcatgggcatggacattgtccacat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25524757 |
gggactactgagttgtcacttttgatatttcgtcttcctgtcttctataaacaaagaggcaatttattttatccggcatgggcatggacactgtccacat |
25524658 |
T |
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| Q |
422 |
ggattcttcaatttccttattccattgttgaatctgttgcatggactggtgtcgtgtactacattattggatttgctcctgcacctgggaggtattttac |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524657 |
ggattcttcaatttccttattccattgttgaatctgttgcgtggactggtgtcgtgtactacattattggatttgctcctgcacctgggaggtattttac |
25524558 |
T |
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| Q |
522 |
tttacattcatatactgtcttatgac |
547 |
Q |
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|||||||||||||||| ||||||||| |
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| T |
25524557 |
tttacattcatatactctcttatgac |
25524532 |
T |
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