View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_low_4 (Length: 439)
Name: NF6877_low_4
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 37 - 348
Target Start/End: Original strand, 41689197 - 41689523
Alignment:
| Q |
37 |
aaggcatgacttggcctctannnnnnnggaaattgattaaaagaggtatatcgcctcttggttattat--tataccaaagaattagatgcatcaaaactg |
134 |
Q |
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| T |
41689197 |
aaggcatgacttggcctctatttttttggaaattgattaaaagaggtttatcgcctcttagttattatattataccaaaggattagatgcatcaaaactg |
41689296 |
T |
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| Q |
135 |
atctctagacctagcttaatcatgcttgaatattgaattcaatatatattgctactgtgaattgtgaaacatatattccttaattttattagattagata |
234 |
Q |
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| T |
41689297 |
atctctagacctagcttaatcatgcttgaatattgaattcaatatatatggctactgtgaattgtgaaacatatattccttaattttattagattagata |
41689396 |
T |
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| Q |
235 |
aaaaattaatctggatcgnnnnnnntagtaaggttcctcttagatatcaatttgggcattcaacctg-------------ttttttgttttgtctccatt |
321 |
Q |
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| T |
41689397 |
aaaaattaatctggatcgaaaaaaatagtaaggttcctcttagatatcaatttgggcattcaacctgttttttttttttttttttttttttgtctccgtt |
41689496 |
T |
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| Q |
322 |
gtatgacaacaagagcacttgttgtac |
348 |
Q |
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| T |
41689497 |
gtatgacaacaagagcacttgttgtac |
41689523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 426
Target Start/End: Original strand, 41689548 - 41689602
Alignment:
| Q |
372 |
cactccagcacttgttatcttttgattgactttggcatatgatttcagtattatc |
426 |
Q |
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| T |
41689548 |
cactcctgcacttgttatcttttgattgactttggcatatgatttcagtattatc |
41689602 |
T |
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