View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6877_low_8 (Length: 291)
Name: NF6877_low_8
Description: NF6877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6877_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 29981855 - 29982002
Alignment:
| Q |
92 |
gtaagatggtggtcattatcaatctgtttttattaatcatatagttgaatatcatctcttcttttccaaaacatattatcgtatagctagccacaaaaag |
191 |
Q |
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| T |
29981855 |
gtaagatggtggtcattatcaatctgtttttattaatcatatagttgaatatcatctcttcttttccaaaacatattatcgtatagctagccacaaaaag |
29981954 |
T |
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| Q |
192 |
cactaaagttggtaaaagaatcataataaataaataaaaacatttgat |
239 |
Q |
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| T |
29981955 |
cactaaagttggtaaaagaatcataataaataaataaaaacatttgat |
29982002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 29981807 - 29981870
Alignment:
| Q |
7 |
ataagtactgtcgacttcttctagaaaagaagatgcatatgcatgtatgtaagatggtggtcat |
70 |
Q |
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| T |
29981807 |
ataagtactgtcgacttcttctagaaaagaagatgcatatgcatgtatgtaagatggtggtcat |
29981870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 29980529 - 29980635
Alignment:
| Q |
133 |
tagttgaatatcatctcttcttttccaaaacatattatcgtatagctagccacaaaaagcactaaagttggtaaaagaatcataataaataaat-aaaaa |
231 |
Q |
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| T |
29980529 |
tagttgaatatcacctttt-ttctcgaaaacctagtatcgtatagctagccacaaaaggcattaaagttggtaaaagaattatcatagatgaataaaaaa |
29980627 |
T |
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| Q |
232 |
catttgat |
239 |
Q |
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|||||||| |
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| T |
29980628 |
catttgat |
29980635 |
T |
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