View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6878_high_3 (Length: 220)
Name: NF6878_high_3
Description: NF6878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6878_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 53295418 - 53295604
Alignment:
| Q |
19 |
taaatcatattgttagaaatttcaatacacaaatcaatgagaaaattggataataagctaattgaatgtataaaagatgcaaatcggagggaaaaagatg |
118 |
Q |
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| T |
53295418 |
taaatcacattgttagaaatttcaatacacaaatcaatgagaaaattggataataagctaattgaatgtataaaagatgttaatcggagggaaaaagatg |
53295517 |
T |
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| Q |
119 |
ctaatcggagggaaaaagatacttacggccattgtagaacggttcgaaaacgaagacgctgaaacggtcgctgctttctcctctctg |
205 |
Q |
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| T |
53295518 |
ctaatcggaggtaaaaagatgcttacggccattgtagaacggttcgaaaacgaagacgctgaaacggtggatgctttctcctctctg |
53295604 |
T |
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