View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6878_low_2 (Length: 424)
Name: NF6878_low_2
Description: NF6878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6878_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 140 - 416
Target Start/End: Complemental strand, 36670201 - 36669939
Alignment:
| Q |
140 |
aaactgttcagtcagccttttatatgcagcttgcaaattgatttatgtttccatacattaaaattatacgttggatcaaaattgtttttgccattataat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36670201 |
aaactgttcagtcagccttttatatgcagcttgcaaattgatttatgtttccatacattaaaattatacgtt--------------tttgccattataat |
36670116 |
T |
|
| Q |
240 |
tatcaaaatggattttaatatatctatttaaactaggggtgacacaacggatgaatttgatgaatatggatttagataagaatggatggatnnnnnnnnt |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
36670115 |
tatcaaaatgggttttaatatatctatttaaactaggggtgacacaacggatgaatttgatgaatatggatttagataagaatggatggataaaaaaaat |
36670016 |
T |
|
| Q |
340 |
cattggtccattataattcattatatttcttttgttgaaaaaaccatttaatccatccattaactatgatgtccatc |
416 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36670015 |
cattagtccattataattcattatatttcttttgttgaaaaaaccatttaatccatccattaactataatgtccatc |
36669939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 36670354 - 36670227
Alignment:
| Q |
16 |
tgtattagtggtcaggtacacaaactgatnnnnnnnggaatatatgtttcaaattgcatttataaactaataattttatgtattacttctcttgaacagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36670354 |
tgtattagtggtcaggtacacaaactgataaaaaa-gcaatatgtgtttcaaattgcatttataaactaataattttatgtattacttctcttgaacagg |
36670256 |
T |
|
| Q |
116 |
aaggtagaacatgagtacatttttaaact |
144 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |
|
|
| T |
36670255 |
aaggtagaatatgtgtacatttttaaact |
36670227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 417
Target Start/End: Complemental strand, 3680503 - 3680455
Alignment:
| Q |
369 |
ttttgttgaaaaaaccatttaatccatccattaactatgatgtccatct |
417 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| |||| ||||| |
|
|
| T |
3680503 |
ttttgttgaaaaaaccatccaatccatccattaagtattatgttcatct |
3680455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 8041274 - 8041230
Alignment:
| Q |
214 |
atcaaaattgtttttgccattataattatcaaaatggattttaat |
258 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
8041274 |
atcaaaattgtttttgaaagtataattatcaaaatgggttttaat |
8041230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 25747995 - 25748039
Alignment:
| Q |
214 |
atcaaaattgtttttgccattataattatcaaaatggattttaat |
258 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||| |
|
|
| T |
25747995 |
atcaaaattgcttttgaaagtataattatcaaaatggattttaat |
25748039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University