View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6878_low_5 (Length: 215)
Name: NF6878_low_5
Description: NF6878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6878_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 21830957 - 21831143
Alignment:
| Q |
25 |
gtcaagtattatagttggagaaacaaggaaacatgggtttgagccctacataccaatatttacgtagttaactaccgagctacacttacataattttgtt |
124 |
Q |
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| T |
21830957 |
gtcaagtattatagttggagaagcaaggaaacatgggtttgagccctacataccaatatttacgtagtta----ccgagctacacttacataattttgtt |
21831052 |
T |
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| Q |
125 |
ttcacaattagatacacacattcttgaattcaattaaaatctaaaacttgtccatttagaattatgtttcataatcaatttcaaaataaat |
215 |
Q |
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| T |
21831053 |
ttcacaattagatacacacatttttgaattcaattaaaatctaaaacttgtcgatttagaattatgtttcataatcaatttcaaaataaat |
21831143 |
T |
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