View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_1 (Length: 526)
Name: NF6879_high_1
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 518
Target Start/End: Complemental strand, 115803 - 115301
Alignment:
| Q |
18 |
aaaatacagagcaatcaggatactccataaatttcttctttgagatt-tgttgttgttattt-ggaagagatatggttggaagagagtttggatcttgca |
115 |
Q |
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| T |
115803 |
aaaatacagagcaatcaggatactccataaatttcttctttgagattgtgttgttgttattttggaagagatatggttggaagagagtttggatcttgca |
115704 |
T |
|
| Q |
116 |
acttcctacaaccagcaagaagcatcgacatgagtgatattccatctccaagtgaatgatgaattctaaatataatacacttgtgtgctctcagaatatg |
215 |
Q |
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| T |
115703 |
acttcctacaaccagcaaggagcatcgacatgagtgatattccatctccaagtgaatgatgaattctaaatataatacacttgtgtgctctcagaatatg |
115604 |
T |
|
| Q |
216 |
catctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagact |
315 |
Q |
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| T |
115603 |
catctcccaaagtggcttatccatgctcagttttgattctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagact |
115504 |
T |
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| Q |
316 |
gattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaacc |
415 |
Q |
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| T |
115503 |
gattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaacc |
115404 |
T |
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| Q |
416 |
ttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttcat |
515 |
Q |
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| T |
115403 |
ttggatgttggagcataactgagttttggatttgggtttttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttcat |
115304 |
T |
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| Q |
516 |
ctc |
518 |
Q |
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| T |
115303 |
ctc |
115301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 277 - 518
Target Start/End: Complemental strand, 14832587 - 14832349
Alignment:
| Q |
277 |
tcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgtt |
376 |
Q |
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|||||||||||||||||||| ||||| | |||||||| |||||| |||||| |||| |||||| |||||| ||||| |||||| || |||||| |
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| T |
14832587 |
tcactgattgctgattcatcctccttgtttgtagagactgaatcgttgatgatga---agattcggcggttgaggtcgattttaattggatgctagtgtt |
14832491 |
T |
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| Q |
377 |
caacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattgg |
476 |
Q |
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|||| |||||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||| | |||||||| |||||||| ||||| |
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| T |
14832490 |
caacgcctcgatggtcacggaccatgagacttgtaaaccttggatgttggagcataacagagttctggatttggttatttactgagtcaacatcaattgg |
14832391 |
T |
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| Q |
477 |
tttcttcaaccctatgacacagtggattatttggttcatctc |
518 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
14832390 |
attcttcagacctatgacacagtggattatttggttcatctc |
14832349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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