View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_11 (Length: 337)
Name: NF6879_high_11
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 39475621 - 39475315
Alignment:
| Q |
20 |
atttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactc |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39475621 |
atttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaactc |
39475522 |
T |
|
| Q |
120 |
aagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacacttgatcagtgtgactgtgttttga |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39475521 |
aagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacacttgatcagtgtgactgtgttttga |
39475422 |
T |
|
| Q |
220 |
attgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattattagtatgaatataattatattatactaggagtgtttgatgca |
319 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39475421 |
attgttgttttgatgttcctgttatttaaataggaataggaatagtgtagataattattagtatgaatataattatattatactaggagtgtttgatgca |
39475322 |
T |
|
| Q |
320 |
tgttctt |
326 |
Q |
| |
|
||||||| |
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|
| T |
39475321 |
tgttctt |
39475315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 39451115 - 39450949
Alignment:
| Q |
20 |
atttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactc |
119 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || || |
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| T |
39451115 |
atttagtgttgacatcattttctgatatatgtgggaatttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattc |
39451016 |
T |
|
| Q |
120 |
aagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttg |
186 |
Q |
| |
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||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39451015 |
aagggtggaaactagatggctcacaccaggaaaagggataaacaccacttctgctttcttcatcttg |
39450949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 39472151 - 39471983
Alignment:
| Q |
20 |
atttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactc |
119 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
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|
| T |
39472151 |
atttagtgtagacatcggtttctgtgatgtgtgggaatttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactc |
39472052 |
T |
|
| Q |
120 |
aagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttgga |
188 |
Q |
| |
|
|| | |||| || ||| | | | | |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
39472051 |
gagagcagaaactatatgaccctcagccggaaaagggacaaacaccacttctgctttcttcatcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 39454726 - 39454592
Alignment:
| Q |
48 |
gtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccg |
147 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||||||||||| ||||||||||| ||| | |||||||| ||||||| || ||||| | ||| |
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| T |
39454726 |
gtgtggaaatttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacacca |
39454627 |
T |
|
| Q |
148 |
ggaaaagggataaacaccacttctgctttcttcat |
182 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
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|
| T |
39454626 |
ggagaagggataaacaccacttctgctttcttcat |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 39460307 - 39460197
Alignment:
| Q |
78 |
tcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttc |
177 |
Q |
| |
|
|||||| || |||||||| ||| |||||||||| | |||||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
39460307 |
tcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttc |
39460208 |
T |
|
| Q |
178 |
ttcatcttgga |
188 |
Q |
| |
|
||||||||||| |
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|
| T |
39460207 |
ttcatcttgga |
39460197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 39480441 - 39480300
Alignment:
| Q |
67 |
aaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacacca |
166 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||| | || ||||| ||||||| |||||| | | ||| || ||||||||| ||||| |
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|
| T |
39480441 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcacca |
39480342 |
T |
|
| Q |
167 |
cttctgctttcttcatcttggatatacacttgatcagtgtga |
208 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||| |
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| T |
39480341 |
cttctgctttcttcatcctggatatgcacttactcagtgtga |
39480300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 39458348 - 39458536
Alignment:
| Q |
20 |
atttagtgttgacatcattttctgttatgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactc |
119 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||| ||||| || || || | |||| |||||||||||||||||| |||||||||||||| |||| || |
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|
| T |
39458348 |
atttagtgtagacatctatttctgttgtgtgtggaaatttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattc |
39458447 |
T |
|
| Q |
120 |
aagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttcttcatcttggatatacacttgatcagtgtga |
208 |
Q |
| |
|
|| ||||||| |||||| | | ||| || ||| ||||| |||||||||||||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
39458448 |
gagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtga |
39458536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 39486547 - 39486405
Alignment:
| Q |
47 |
tgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagacc |
146 |
Q |
| |
|
|||||||||||||||| || || | ||| |||||||||||||||||| |||||||||||||| |||| ||||| ||||||| |||||| | | ||| |
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|
| T |
39486547 |
tgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacacc |
39486448 |
T |
|
| Q |
147 |
gggaaaagggataaacaccacttctgctttcttcatcttggat |
189 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
39486447 |
aggtgaagggataatcaccacttctgctttcttcatcttggat |
39486405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 39464617 - 39464750
Alignment:
| Q |
49 |
tgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgg |
148 |
Q |
| |
|
||||||| |||||| ||||| | ||| |||||||||||||||||| ||||||||||||||| |||||||||| | |||| |||||| | | | ||| |
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|
| T |
39464617 |
tgtgggagtttgatgactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgg |
39464716 |
T |
|
| Q |
149 |
gaaaagggataaacaccacttctgctttcttcat |
182 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
39464717 |
gaaaagggataaacactacttctgctttcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 43312626 - 43312730
Alignment:
| Q |
79 |
cggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacaccacttctgctttct |
178 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| |||||||||| ||||| | || ||| | || ||| ||| |||||||||||||||||||| ||||| |
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|
| T |
43312626 |
cggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct |
43312725 |
T |
|
| Q |
179 |
tcatc |
183 |
Q |
| |
|
||||| |
|
|
| T |
43312726 |
tcatc |
43312730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 39470838 - 39470979
Alignment:
| Q |
47 |
tgtgtgggaatttgataactaaaacagttgctcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagacc |
146 |
Q |
| |
|
||||||||||||| || ||||| |||||| || ||| ||||||||| | |||||||||||||| | ||||| | | |||| |||||| | | | | |
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|
| T |
39470838 |
tgtgtgggaatttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagc |
39470937 |
T |
|
| Q |
147 |
gggaaaagggataaacaccacttctgctttcttcatcttgga |
188 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
39470938 |
gggaaaagggataaacaccacttccactttcttcatgttgga |
39470979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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