View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_15 (Length: 300)
Name: NF6879_high_15
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_15 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 29202653 - 29202373
Alignment:
| Q |
17 |
aaatatgaagacgaaacttgtataaaaatagcattatcattctattttattcgattcaaagatccttaacccttattgcactccattaatataaatagag |
116 |
Q |
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| T |
29202653 |
aaatatgaagacgaaacttgtataaaaatagcattatcattctattttattcgattcaaagacccttaacccttattacactccatta---taaatagag |
29202557 |
T |
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| Q |
117 |
ccatacatgattaattggctcttcacaataattgaaaaacaaaacccttatcacactccattataaatagagctatacatgattggcttttcacaaagca |
216 |
Q |
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| T |
29202556 |
ttatacatgattaattggctcttcacaagaattgaaaaacaaaacccttatcacactccattataaatagagccatacatgattggcttttcacaaagca |
29202457 |
T |
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| Q |
217 |
aagaaattagagatattaagcagaaagatataatgagcttgatgaacaagaatgcaatgattatgttgcttttcctcttaagct |
300 |
Q |
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| T |
29202456 |
aagaaattagagatattaagcagaaagatataatgagcctgatgaacaagaatgcaatgattatgttgcttttcctcttaagct |
29202373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 29198031 - 29197943
Alignment:
| Q |
161 |
cccttatcacactccattataaatagagctatacatgattggcttttcacaaagcaaagaaattagagatattaagcagaaagatataa |
249 |
Q |
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| T |
29198031 |
cccttattgcactccattataaatagagccagacatggttggctcttcacaagtcaaataaattagagatattaaacagaaagatataa |
29197943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 29198132 - 29198096
Alignment:
| Q |
17 |
aaatatgaagacgaaacttgtataaaaatagcattat |
53 |
Q |
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||||||||| | ||||||||||||||||||||||||| |
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| T |
29198132 |
aaatatgaaaatgaaacttgtataaaaatagcattat |
29198096 |
T |
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