View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_2 (Length: 437)
Name: NF6879_high_2
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 17975910 - 17976321
Alignment:
| Q |
17 |
acaaactgagacaacttatcggacctatttcaccttcttaaataactgcatcataagtataatgtttctaaagtcattgaagctaatttaattgcacaat |
116 |
Q |
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| T |
17975910 |
acaaactgagacaacttatcggacctatttcaccttcttaaataactgcatcataagtataatgtttctaaagtcattgaagctaatttaattgcacaat |
17976009 |
T |
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| Q |
117 |
aatgatgattaagaataataacagccctaaaaaagaaagttaattaaacagtaacttaatttgttttcacagtaagaaaataaaatgtaacttgatat-- |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
17976010 |
aatgatgattaagaataataacagccctaaaaaagaaagttaattaaacagtaacttaatttgttttcacagtaag-aaataaaatgtaacttgatatct |
17976108 |
T |
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| Q |
215 |
-ctgtatgcaagaatcttgtatgaacttctaactattaacatttatgaaacnnnnnnnnntactatatttaacattatacctcaagcattcgccatggac |
313 |
Q |
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| T |
17976109 |
gctgtatgcaagaatcttgtatgaacttctaactattaacatttatgaaacaaaaaaaaatactatatttaacattatacctcaagcatccgccatggac |
17976208 |
T |
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| Q |
314 |
aattaggagcagatagagcagatattgttccctcaaattttgagcatctctttgaagaatcgtaattcttcgaagaaagttcaattctcactccaagact |
413 |
Q |
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| T |
17976209 |
aattaggagcagatagagcagatattgttccctcaaattttgagcatctctttgaagaatcgtaattcttcgaagaaagttcaattctcactccaagact |
17976308 |
T |
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| Q |
414 |
ccaactaatattc |
426 |
Q |
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| T |
17976309 |
ccaactaatattc |
17976321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 17914983 - 17914865
Alignment:
| Q |
290 |
atacctcaagcattcgccatggacaattaggagcagatagagcagatattgttccctcaaattttgagcatctctttgaagaatcgtaattcttcgaaga |
389 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |||| |
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| T |
17914983 |
atacctcaagcatgcgccatggacgattaggagcagatagagcagatattgttccctcaaaatttgagcatctctttgaagaattgtctttcttcaaaga |
17914884 |
T |
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| Q |
390 |
aagttcaattctcactcca |
408 |
Q |
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||| |||||||| |||| |
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| T |
17914883 |
gtgtttaattctcaatcca |
17914865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 408
Target Start/End: Complemental strand, 8823932 - 8823814
Alignment:
| Q |
290 |
atacctcaagcattcgccatggacaattaggagcagatagagcagatattgttccctcaaattttgagcatctctttgaagaatcgtaattcttcgaaga |
389 |
Q |
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||||||||||||| |||||||||| ||||||||| || ||||| |||||||| |||| ||| ||| ||||||||||||||||| | ||||||| |||| |
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| T |
8823932 |
atacctcaagcatgcgccatggacgattaggagctgagagagcggatattgtacccttaaaaactgaccatctctttgaagaatcctcattcttcaaaga |
8823833 |
T |
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| Q |
390 |
aagttcaattctcactcca |
408 |
Q |
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|| || |||| ||| |||| |
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| T |
8823832 |
aaatttaattttcattcca |
8823814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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