View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_21 (Length: 237)
Name: NF6879_high_21
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 41106436 - 41106633
Alignment:
| Q |
16 |
ttcgtgttaatgtaaaacaacaatgaaagtttggacctcatcaaggaaattttgctacagctcttccaaaagatgcttgtgcaaattctgccccaaacat |
115 |
Q |
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| T |
41106436 |
ttcgtgttaatgtaaaacaacaatgaaagtttggacctcatcaaggaaattttgctacagctcttccaaaagatgcttgtgcaaattctgccccaaacat |
41106535 |
T |
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| Q |
116 |
aacgctatgttgagctaaagcagttccttaaatatatgggaagaccaaataatgagaataaaaattacagacttatctaatgactaatatgaaacaag |
213 |
Q |
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| T |
41106536 |
aacgctatgttgagctaaagcagttccttaaatatatgggaagaccaaataatgagaataaaaattacagacttatctaatgactaatatgaaacaag |
41106633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 196
Target Start/End: Complemental strand, 35705000 - 35704848
Alignment:
| Q |
39 |
tgaaagtttggacctcatcaaggaaattttgctacagctcttccaaaagatgcttgtgcaaattctgccccaaacataacgctatgttgagctaaagcag |
138 |
Q |
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| T |
35705000 |
tgaaagttttgacctcatcaagttaattctgctaccgctcttccaaaagatgcg------aattctgccccacacataaggctaagttgagttaaatcag |
35704907 |
T |
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| Q |
139 |
ttccttaaatatatgggaagaccaaataat-gagaataaaaattacagacttatctaat |
196 |
Q |
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| T |
35704906 |
ttccttgaatatatagaaagaccgcataatggggaacaaaaattacacacttatctaat |
35704848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 35445012 - 35445085
Alignment:
| Q |
41 |
aaagtttggacctcatcaaggaaattttgctacagctcttccaaaagatgcttgtgcaaattctgccccaaaca |
114 |
Q |
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||||||| ||||||||| |||| || |||| || || ||||||||||||||| |||||| |||||||||||| |
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| T |
35445012 |
aaagtttcaacctcatcagggaagttctgctccaattcctccaaaagatgcttgcgcaaatcctgccccaaaca |
35445085 |
T |
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