View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_high_4 (Length: 416)
Name: NF6879_high_4
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 43101835 - 43102227
Alignment:
| Q |
17 |
attttgaaaattggagaccgaaaccaggaatctaaaaatagtagccaattgatatatctttcaaactaaacttgatctaatggtgtaaaagtgcacaacc |
116 |
Q |
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| T |
43101835 |
attttgaaaattggagaccgaaaccaggaatctaaaaatagtagccatttgatatatctttcaaactaaacttgatctaatggtgtaaaagtgcacaacc |
43101934 |
T |
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| Q |
117 |
aacagacccttcatccagagagagtaaatgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaataagaccaacttttta |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43101935 |
aacagacccttcatccagag--agtaaatgttaaaagacaactacctcttgatgcaacattatcctgaaaagctgtaaatgaaataagaccaacttttta |
43102032 |
T |
|
| Q |
217 |
caatgaccgaagtaacaggaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaatgacgatgtcaaacaatcccagatta |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
43102033 |
caatgaccgaagtaacagaaacctcagtgaaatgattctagaagaaaaatgtcaagtaaaagagcaaatggaaaggaccatgtcaaacaatcccagatta |
43102132 |
T |
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| Q |
317 |
acccatcttcaatgggaggacaacatgccctgggtagtttagctagacatctggggcagagtaatcaagagatggtagaagccacgctttggtct |
411 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| | ||||||| |
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| T |
43102133 |
tcccatcttcaatgggaggactacatgccctgggtagtttagctagacatctggggcagaggaatcaaatgatggtagaagccaccccttggtct |
43102227 |
T |
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