View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6879_high_8 (Length: 393)

Name: NF6879_high_8
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6879_high_8
NF6879_high_8
[»] chr3 (11 HSPs)
chr3 (18-381)||(224768-225131)
chr3 (77-368)||(210345-210639)
chr3 (77-368)||(221893-222184)
chr3 (77-368)||(216948-217239)
chr3 (77-368)||(197070-197361)
chr3 (77-368)||(204832-205123)
chr3 (124-222)||(198274-198372)
chr3 (116-222)||(226108-226214)
chr3 (116-222)||(211665-211771)
chr3 (124-290)||(203516-203682)
chr3 (248-285)||(226240-226277)
[»] chr5 (1 HSPs)
chr5 (77-368)||(29838223-29838514)
[»] chr4 (2 HSPs)
chr4 (77-368)||(6903370-6903661)
chr4 (124-290)||(6904803-6904969)
[»] chr1 (1 HSPs)
chr1 (103-290)||(3808344-3808532)


Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 224768 - 225131
Alignment:
Q  18 aaaagaagggtttaattctgttccttcatcctcacttggtgaatcatcagcataattgatttcaaccctggaccttttcataggcctaggacacttggtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||    
T  224768 aaaagaagggtttaattctgttccttcatcctcacttggtgaatcatcagcataattgatttcaaccctggaccttttcgtaggtctaggacactctgtg 224867  T
Q  118 tttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatt 217  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  224868 tttgtttctccattagtacttggagttttgagtggatagcaaatctcaacagaagttacatcaaatataataacactaaactttgaattcccttcatatt 224967  T
Q  218 tgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaa 317  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  224968 tgaaagacatgaagcaaccatatcttaaagaatagtattctgcaaattgtttccatttgttgcaaaagtaaacatcctccccacgtttcttcaattccaa 225067  T
Q  318 tttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccatatatt 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  225068 tttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttcgctcccatatatt 225131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 210345 - 210639
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  210345 tttcaaccttggaccttttcataggcctaggacactcggtgtttgtttctccactagtacttggagtttttaatggatagcaaatttcaacagaagttgc 210444  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccat--- 273  Q
    |||||||||||||||  |||| |||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||       
T  210445 atcaaatataataacgctaaaatttgaattcccttcgtatctgaaagacaggaagcaaccgtatcttaaagaatagtattctgcaaactgttgccattcc 210544  T
Q  274 ttgttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    ||||||||||||||||||||||| |||| ||||||||| |||| || ||||  |  |||||| || ||||||| |||||||||||||| ||||||    
T  210545 ttgttgcaaaagtaaacatcctcgccacatttcttcaagtccatttcccaatcacaaccatcgggaacagtaactgtagcaacattctcgagttc 210639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 221893 - 222184
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||| ||||||||||| |||| ||| ||||||| ||||||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||    
T  221893 tttcaaccttggaccttttcctaggactatgacactttgtgtttgtttctccattaatactttgagttttgaatggatagcaaatctcaacagaagttac 221992  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||  || |||| |||| || | || ||||||||||||||||||||||| |||||||    
T  221993 atcaaatataacaacattaaactttgaatccccttcatatttgaaacgcaagaaggaaccataccctatagaatagtattctgcaaactgttgccatttg 222092  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    |||||||||||||| || |  || | |||||||| ||||| || ||||  |   ||||| || |||||||||||||||||||||||||||||    
T  222093 ttgcaaaagtaaacgtcgttgccgcatttcttcagttccatttcccaatcacagccatcgggaacagtaattgtagcaacattcttgagttc 222184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 216948 - 217239
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||| ||||||||||| |||| ||| || |||| || |||||||||||| | |||||| ||||||| ||||||||||||||||||| ||||||| |    
T  216948 tttcaaccttggaccttttcctaggactatgaaactttgtttttgtttctccatttgtactttgagttttgaatggatagcaaatctcaatagaagttgc 217047  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
    |||||||||||  ||| |||||||||||| |||||||||||||||| ||| |||| |||| || | || ||||||||||||||||||||||| |||||||    
T  217048 atcaaatataaagacactaaactttgaatccccttcatatttgaaacacaggaaggaaccataccctatagaatagtattctgcaaactgttgccatttg 217147  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    |||||||||||||| || |  || | |||||||| || || || ||||  |  |||||| || |||||||||||||||||||||||||||||    
T  217148 ttgcaaaagtaaacgtcattgccgcatttcttcagtttcatttcccaatcacaaccatcgggaacagtaattgtagcaacattcttgagttc 217239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 197070 - 197361
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||| ||||||||||| |||| |||| ||| || ||||||| ||||||| ||  ||||||||||||||||||||| |||||||||||| |||||||    
T  197070 tttcaaccttggaccttttcgtaggactagcacattttgtgtttggttctccattaacacttggagtttttaatggataacaaatctcaacataagttac 197169  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
     ||||||||||||||| ||||||||||||||||||| ||||||||||| | | ||||||| || | ||| |||||||||| ||| |||| || ||||| |    
T  197170 gtcaaatataataacactaaactttgaattcccttcgtatttgaaagataggtagcaaccataccctaatgaatagtattttgcgaactcttcccattcg 197269  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    ||| ||||| |||  || |  || ||||||||||||  || |||||||  | ||||||| || || |||| ||||||||| |||| ||||||    
T  197270 ttggaaaagaaaatgtcattgccgcgtttcttcaatctcattttccaatcacgaccatcgggaactgtaactgtagcaactttctcgagttc 197361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 77 - 368
Target Start/End: Complemental strand, 205123 - 204832
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||||| || |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  205123 tttcaacccttgaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 205024  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||||||||| | | |||||||  ||| ||| |||||||||| |||||||| || ||||| |    
T  205023 atcaaatataacaacactaaactttgaatttccttcgtatttgaaagataggtagcaaccacatcctaacgaatagtattttgcaaactcttgccattcg 204924  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    ||| ||||| |||  || |  ||  |||||||||||  || | |||||  | ||||||| |   |||||| |||||||||||||||||||||    
T  204923 ttgtaaaagaaaatgtcattgccgtgtttcttcaatctcattctccaatcacgaccatcagtagcagtaactgtagcaacattcttgagttc 204832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 198274 - 198372
Alignment:
Q  124 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaa 222  Q
    |||||| |||||||||||||||| |||| |||  |||||||||||||||||  |||| |||||| ||||||||||||||||||||||| ||| ||||||    
T  198274 tctccattagtacttggagttttgaatgaataagaaatctcaacagaagttgtatcatatataacaacattaaactttgaattcccttgatagttgaaa 198372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 226108 - 226214
Alignment:
Q  116 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcata 215  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| ||||||||||||||||||||    
T  226108 tgtttggttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttctatcgtatataacaacattgaactttgaattcccttcata 226207  T
Q  216 tttgaaa 222  Q
    |||||||    
T  226208 tttgaaa 226214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 211665 - 211771
Alignment:
Q  116 tgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcata 215  Q
    |||||| ||||||| |||| ||  ||||||  ||||||||  |||||||||||||||||  |||  |||||| |||||| ||||||||||||||||| ||    
T  211665 tgtttgcttctccattagtcctccgagtttggaatggataagaaatctcaacagaagttgtatcgtatataacaacattgaactttgaattcccttcgta 211764  T
Q  216 tttgaaa 222  Q
    |||||||    
T  211765 tttgaaa 211771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 203682 - 203516
Alignment:
Q  124 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaag 223  Q
    |||||| ||||||||| |||||| ||||||||  ||||||||||| |||||  |||| |||||| |||    || |||||||| |||||||| ||||||     
T  203682 tctccattagtacttgaagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaatttgaatttccttcatacttgaaat 203583  T
Q  224 acatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac 290  Q
      |   | |||||||| || |  ||||||||||||||||| |||| ||| |||||||||||| ||||    
T  203582 ctaaataacaaccgtaactgatggaatagtattctgcaaagtgttgccaattgttgcaaaagaaaac 203516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 226240 - 226277
Alignment:
Q  248 aatagtattctgcaaactgtttccatttgttgcaaaag 285  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  226240 aatagtattctgcaaactgttgccaattgttgcaaaag 226277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 29838223 - 29838514
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    |||||||| ||||||||||  |||  |||||| | || || |||| ||||||| |||||||||||||||  || |||||| |||| |||||||||||| |    
T  29838223 tttcaaccttggacctttttctagaactaggataatttgtttttggttctccattagtacttggagtttcgaaaggataggaaatttcaacagaagttgc 29838322  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||| || |||||| |||||| |||||| || |||||||    
T  29838323 atcaaatataataacactaaactttgaattcccttcatatttgaaagaaatgaagcaaccatatcctatagaataatattctacaaactcttgccatttg 29838422  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    ||||||||| |||||| ||| ||||||||||||| ||||| ||||||   | ||||||| || |||||||||||||||||||| ||||||||    
T  29838423 ttgcaaaagaaaacattctcgccacgtttcttcagttccattttccatacacgaccatctggaacagtaattgtagcaacattattgagttc 29838514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 77 - 368
Target Start/End: Original strand, 6903370 - 6903661
Alignment:
Q  77 tttcaaccctggaccttttcataggcctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttac 176  Q
    ||||||||||||| |||||  ||||  ||||||| |  || |||||||||||| ||||||| |||||||| | |||||||||||||||||| ||||||||    
T  6903370 tttcaaccctggaactttttctaggagtaggacattgtgtatttgtttctccattagtactcggagttttgagtggatagcaaatctcaaccgaagttac 6903469  T
Q  177 atcaaatataataacattaaactttgaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttg 276  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||| | | ||||||| |||| ||| |||||||||| |||||||| || ||||| |    
T  6903470 atcaaatataataacactaaactttgaatttccttcgtatttgaaagataggtagcaaccatatcctaatgaatagtattttgcaaactcttgccattcg 6903569  T
Q  277 ttgcaaaagtaaacatcctccccacgtttcttcaattccaatttccaagtaagaccatccggtacagtaattgtagcaacattcttgagttc 368  Q
    ||| ||||| |||  |  |  ||  |||||||||||  || | |||||  | ||||||| ||  |||||| |||||||||||||||||||||    
T  6903570 ttgtaaaagaaaatgtaattgccgtgtttcttcaatctcattctccaatcacgaccatcaggagcagtaactgtagcaacattcttgagttc 6903661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 290
Target Start/End: Original strand, 6904803 - 6904969
Alignment:
Q  124 tctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaactttgaattcccttcatatttgaaag 223  Q
    |||||| |||||||||||||||| ||||||||  ||||||||||| |||||  |||| |||||| |||    || ||||||||| ||||||| ||||||     
T  6904803 tctccattagtacttggagttttgaatggataagaaatctcaacaaaagttggatcatatataacaactacgaaatttgaattctcttcatacttgaaat 6904902  T
Q  224 acatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac 290  Q
      |   | |||| ||| || |  ||||||||||||||||| |||| ||| |||||||||||| ||||    
T  6904903 ctaaataacaactgtaactgatggaatagtattctgcaaagtgttgccaattgttgcaaaagaaaac 6904969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 290
Target Start/End: Original strand, 3808344 - 3808532
Alignment:
Q  103 ctaggacacttggtgtttgtttctccactagtacttggagtttttaatggatagcaaatctcaacagaagttacatcaaatataataacattaaacttt- 201  Q
    |||||| |||| ||||||| ||||| | |||||||||||||||| || |||||||||||| ||||||||||||| ||||||||||||||| ||||||||     
T  3808344 ctaggatactttgtgtttggttctctattagtacttggagttttgaacggatagcaaatcccaacagaagttacgtcaaatataataacactaaactttg 3808443  T
Q  202 gaattcccttcatatttgaaagacatgaagcaaccgtatcttaaagaatagtattctgcaaactgtttccatttgttgcaaaagtaaac 290  Q
    ||||| |||||||| |||||||| | | | ||||| |||| ||  || |||||||||   |||| || |||||||||||||||| ||||    
T  3808444 gaatttccttcataattgaaagaaaggtaccaaccatatcctattgagtagtattctatgaactcttgccatttgttgcaaaagaaaac 3808532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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