View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_1 (Length: 538)
Name: NF6879_low_1
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 42755820 - 42755285
Alignment:
| Q |
1 |
tcaccatttagattttagaatacactagaaaaagctaacttgctgcatgctaacttgcgtaatacttttaaataatactaatttacatagtgacatacgt |
100 |
Q |
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| T |
42755820 |
tcaccatttagattttagaatacactagaaaaagctaacttgctgcatgctaacttgcgtaatacttttaaataatacttatttacatagtgacatacgt |
42755721 |
T |
|
| Q |
101 |
ggtgtggctcttgatggtgtcgagggagagggggttaacctcactgaacttgttgctgaagcaataggagctgcttttgctggatggttagtggagaaaa |
200 |
Q |
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| T |
42755720 |
ggtgtggctcttgatggtgtcgagggagagggggttaacctcactgaacctgttgctgaagcaataggagctgctttcgctggatggttagtggagaaaa |
42755621 |
T |
|
| Q |
201 |
agaaagcagatgcttctcagcatttgagagtttctattggccatgattcccggatatcagccaaattgctacaggtctaaattgttcctcataccattgc |
300 |
Q |
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| T |
42755620 |
agaaagcagatgcttctcagcatttgagagtttctattggccatgattcccggatatcagccaaattgctacaggtctaaattgttcctcataccattgc |
42755521 |
T |
|
| Q |
301 |
tcatgttttaagaacctttaaaatatcaaaggctttgttgattgtgccaaattttataatggttttgaagagaattctggtgtcaattacatgcacattt |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42755520 |
tcatgttttaggaacctttaaaatatcaaaggctttgttgattgtgccaaattttataatggttttgaagagaattctggtgtccattacatgcacattt |
42755421 |
T |
|
| Q |
401 |
tctgatacatgaaagatggagtgaactataataagtaataacttgaaaacatgtttcttttattttgttgttgccacttgcaagtcttttgggtcaaaag |
500 |
Q |
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| T |
42755420 |
tctgatacatgaaagatggagtgaactataataagtaataacttgaaaacatgtttcttttattttgttgttgccacttgcaagtcttttgggtcaaaag |
42755321 |
T |
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| Q |
501 |
aggttcaacacttcattttaacttttgccttcttct |
536 |
Q |
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| T |
42755320 |
aggttcaacacttcattttaacttttgctttcttct |
42755285 |
T |
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