View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_10 (Length: 370)
Name: NF6879_low_10
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 292
Target Start/End: Complemental strand, 8074568 - 8074291
Alignment:
| Q |
15 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8074568 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
8074469 |
T |
|
| Q |
115 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccaccc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8074468 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttatcaccc |
8074369 |
T |
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| Q |
215 |
aaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgtttcgcaggaacaaaatca |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8074368 |
aaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatatttaaatgtttcgcaggaacaaaatca |
8074291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 8073876 - 8073806
Alignment:
| Q |
289 |
atcatgtatcctccagtgcacccaacaaaggatttgttagaagtattatccaattcaaacatagtattctt |
359 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8073876 |
atcatgtatcctccggtgcacccaacaaaggatttgttagaagtattatccaattcaaacgtagtattctt |
8073806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 40954428 - 40954703
Alignment:
| Q |
15 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
114 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||||||| | || ||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |
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| T |
40954428 |
accaaccaagtgaggaaacatgatcaccgaattttcccacaattgggatcatgtgtattagctttgcctccatcgaataaatgcaacacctcgcaggaaa |
40954527 |
T |
|
| Q |
115 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccaccc |
214 |
Q |
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||||| ||||||||||||| | |||| |||||| | ||||||||| ||||||||| | |||||||||||||| |||||||||| ||||||||| |||| |
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| T |
40954528 |
agtcttgagataatacaca--actgctaagatgtacgcatttacccagtcttctcacatcacaatgacccttaactcctaagaataatgctttatcacct |
40954625 |
T |
|
| Q |
215 |
aaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatgtttcgcaggaacaaaatca |
292 |
Q |
| |
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||||| | ||||||||||||| ||||||||||||||| |||| ||||||||||||||| || ||||||||||||||| |
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| T |
40954626 |
aaatcgcccaccttaatccacctcattgtatcgaaattcatcatgtagatattcaaatgctttgcaggaacaaaatca |
40954703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 40955455 - 40955197
Alignment:
| Q |
15 |
accaaccaagtgaagaaacttgatcaccagattttcccaccaacggaatcatgtgtattagctttgattccatagagtaaatgcagcacctagcaggaaa |
114 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||| |||| | || |||||||||||||||||| ||||| | |||||||| ||||| |||||||| |
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| T |
40955455 |
accaaccaagtgaggaaacctgatcaccggatttttccacaattgggatcatgtgtattagcttttcctccatcaaataaatgcaacacctcgcaggaaa |
40955356 |
T |
|
| Q |
115 |
agtctcgagataatacacacaattgctcagatgtccccatttacccggtcttctcatagcacaatgacccttacctcctaagaacaatgctttaccaccc |
214 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||| ||||| |||| |
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| T |
40955355 |
agtctcgagataatacacaaaattgctaagatgtccccatttacccagtcttctcacatcacaatgacccttacctcctaagaataattctttatcacct |
40955256 |
T |
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| Q |
215 |
aaatcactcaccttaatccacatcattgtatcgaaatccatctcgtagatattcaaatg |
273 |
Q |
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| ||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
40955255 |
agatcgcccaccttaatccacctcattgtatcgaaatttatctcgtagattttcaaatg |
40955197 |
T |
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