View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_13 (Length: 346)
Name: NF6879_low_13
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 346
Target Start/End: Complemental strand, 34824669 - 34824333
Alignment:
| Q |
3 |
tgagatggacatcacttgtttagttatcatagatgaataaatacatcgtgccttacaatacttgcgtgctttgtgctaacataagaccttcacgctatag |
102 |
Q |
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| T |
34824669 |
tgagatggacattacttgtttagttatcatagatgaataaatacatcgtgccttccaatacttgcgtgctttgtgctt---ttggatgt----gctatgg |
34824577 |
T |
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| Q |
103 |
ttagagagtatgagcaacaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacattta |
202 |
Q |
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| T |
34824576 |
ttagagagtatgagcaacaaggtttacatcatttttcttgtgataaatccagtcatacagactacaattttgatgatttagtaacaaggctcgacattta |
34824477 |
T |
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| Q |
203 |
taaacggcaaataaaacccgttccaactcagccatatataagaacgttaattaattgtcgttcaactttacagtaagatccttgtgagtcatcaaaggtt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824476 |
taaacggcaaataaaacccgttccaactcagccatatataagaacgttaattaattgttgttcaactttacagtaagatccttgtgagtcatcaaaggtt |
34824377 |
T |
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| Q |
303 |
atactggatgatggcttgtactggagttgcactgatgggttctt |
346 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34824376 |
atactggatgatggcttgtactggagttgctatgatgggttctt |
34824333 |
T |
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