View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_16 (Length: 314)
Name: NF6879_low_16
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 225143 - 225432
Alignment:
| Q |
19 |
ttcaggaattctctgcagttattatcacttgtttaattgattataataccactcatcagttatactattacaannnnnnnnnnnnnnnnnnnn--tagtg |
116 |
Q |
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| T |
225143 |
ttcaggaattctctgcagttattatcacttgtttaattgattataaaacaactcatcagttatactattagaaagagagagagagagagagagagtagtg |
225242 |
T |
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| Q |
117 |
aattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctgcctgcaattcaataagtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
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| T |
225243 |
aattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaatttccatctctgcctgcaattcaataagtg |
225342 |
T |
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| Q |
217 |
ataagtgtcaatgcttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgtgtgtgcggt |
306 |
Q |
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| T |
225343 |
ataagtgtcaacacttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgtgtgagcggt |
225432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 210662 - 210931
Alignment:
| Q |
17 |
ttttcaggaattctctgcagttattatcacttgtttaattgattataataccactcatcagttatactattacaannnnnnnnnnnnnnnnnnnntagtg |
116 |
Q |
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| T |
210662 |
ttttctggaattctctgcagttatcatcacttgtttaattgattataaaataactcatcagttatactattagaaagagaga--------------agag |
210747 |
T |
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| Q |
117 |
aattttacaatttctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctgcctgcaattcaataagtg |
216 |
Q |
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| T |
210748 |
aattttacaatttctttgtcataaatgggtgagggaagtatagcttttttaaaatgtatggattccctaacttccttctccgcctgcaattcaataagtg |
210847 |
T |
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| Q |
217 |
ataagtgtcaatgcttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgtgtg |
300 |
Q |
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| T |
210848 |
ataagtgttaacgcttctcacattcagaacaccaattcgcattacaaacaaagaataatgaacttgtatgtggcgtgacgtgtg |
210931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 197599 - 197668
Alignment:
| Q |
129 |
tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg |
198 |
Q |
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| T |
197599 |
tctttgtcatgaatgggcgagggaagtatggccttcttgaaatgtttggattcccttacttccttttctg |
197668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 204369 - 204300
Alignment:
| Q |
129 |
tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg |
198 |
Q |
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| T |
204369 |
tctttgtcatgaatgggcgagggaagtatgtccatcttaaaatgttcggattcccttacttctttttctg |
204300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 223560 - 223602
Alignment:
| Q |
133 |
tgtcatgaatgggtgagggaagtatggccttcttaaaatgttt |
175 |
Q |
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| T |
223560 |
tgtcatgaatgggtgagggaaggatggctttcataaaatgttt |
223602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 6904121 - 6904190
Alignment:
| Q |
129 |
tctttgtcatgaatgggtgagggaagtatggccttcttaaaatgtttggattccctaacttctttttctg |
198 |
Q |
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| T |
6904121 |
tctttgtcatgaatgggcgagggaagtatggccatcttaaaatgttcggattcccttacttctttttctg |
6904190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 34122236 - 34122167
Alignment:
| Q |
231 |
ttcacacattcagatcaccaattcacattataaacaaagaataatgaactcgtatgtggcgtgacgtgtg |
300 |
Q |
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| T |
34122236 |
ttcacacattcagatcactgattcatgttataaacaaagaataatgaacttgtatgtggcatgacgtgtg |
34122167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 29839309 - 29839354
Alignment:
| Q |
137 |
atgaatgggtgagggaagtatggccttcttaaaatgtttggattcc |
182 |
Q |
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| T |
29839309 |
atgaatgggtgagggaagtatggctttcataaaatgttttgattcc |
29839354 |
T |
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