View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6879_low_17 (Length: 314)

Name: NF6879_low_17
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6879_low_17
NF6879_low_17
[»] chr3 (1 HSPs)
chr3 (7-297)||(33892709-33892999)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 33892999 - 33892709
Alignment:
Q  7 agcagaacctgtgctggacacttatgcaattatgcacaatatcacactccataaaaaa-gctttgctctcagatttttatttgtcagtgtcaatgcttaa 105  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  33892999 agcagcacctatgctggacacttatgcaactatgcacaatatcacatttcataaaaaaagctttgctctcagatttttatttgtcagtgtcaatacttaa 33892900  T
Q  106 gtagcgactattaggaaattataatacaacatggtaggcatctaccg-gttctgttttcactctgaaatgattgataaattatttctgaaactgtaagtg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  33892899 gtagcgactattaggaaattataatacaacatggtaggcatctaccgagttctgttttcactctgaaatgatgcataaattatttctgaaactgtaagtg 33892800  T
Q  205 ttgaatctgacgtggttgctgcatgagattgaattaccagttgtgaatctcccaatatcttgaca-ttcttgcccctattccttgtgacattgt 297  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33892799 ttgaatctgacgtggt---tgcatgagattgaattaccagttgtgaatctcccaatatcttgacatttcttgcccctattccttgtgacattgt 33892709  T

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