View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_20 (Length: 293)
Name: NF6879_low_20
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_20 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 68 - 293
Target Start/End: Complemental strand, 22042876 - 22042649
Alignment:
| Q |
68 |
atgcttattcctctgtcattcctgctccaacttttattccatctcacatatgcaacttgggttttctctccatatat--ctttctatataaaccatatat |
165 |
Q |
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| T |
22042876 |
atgcttattcctctgccattcctgctccaacttttattccatctcacatatgcaacttggcttttctctccatatatatctttatatataacccatctct |
22042777 |
T |
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| Q |
166 |
tgacataattgaatgttcacaataaaaaatataactacatcatctttcacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaa |
265 |
Q |
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|||||| |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22042776 |
tgacattattgcatcttcacaataaaaaatataactacatcatctttaacaactctttccacttcaaatggctggatatcgtgttgtacttaaaagacaa |
22042677 |
T |
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| Q |
266 |
gttttgggaggttttgaaactgtacatc |
293 |
Q |
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|| | |||||||||||||||||||||| |
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| T |
22042676 |
attctaggaggttttgaaactgtacatc |
22042649 |
T |
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