View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_21 (Length: 272)
Name: NF6879_low_21
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 22 - 263
Target Start/End: Complemental strand, 34259803 - 34259561
Alignment:
| Q |
22 |
tcggtgttgg-cacaagacatgcattcaatccaaagtgtcggtgtttgatggttattagctgctggttgatgatactaatatgatatatttacataatct |
120 |
Q |
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| T |
34259803 |
tcggtgttggacaccagacacgccttcaatccaaagtgtcggtgtttgatggttattagctgctggttgatgatactaatatgatatatttacataatct |
34259704 |
T |
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| Q |
121 |
tgtgtgtaaaattcaggtacctacttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaaaacttgcattctggataaatacttacaa |
220 |
Q |
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| T |
34259703 |
tgtgtgtaaaattcaggtacctacttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaaaacttgcattctggataaatacttacaa |
34259604 |
T |
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| Q |
221 |
ttcttctattctgaatgtaagacacttttctgccacacaggtt |
263 |
Q |
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| T |
34259603 |
ttcttctattctgaatgtaagacacttttctgccacacaggtt |
34259561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 6566586 - 6566690
Alignment:
| Q |
145 |
ttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaaaacttgcattctggataaatacttacaattcttctattctgaatgtaagaca |
244 |
Q |
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||||||||||| | ||| ||||||||||||| |||| ||||| || ||||||||||| |||||||| ||||||||||| | ||| ||||||||||| | |
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| T |
6566586 |
ttgggaaacttgcctctgtgaacttgaagggtcttactcatcaggagaaacttgcattttggataaacacttacaattcatgtatgatgaatgtaagata |
6566685 |
T |
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| Q |
245 |
ctttt |
249 |
Q |
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||||| |
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| T |
6566686 |
ctttt |
6566690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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