View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6879_low_22 (Length: 272)
Name: NF6879_low_22
Description: NF6879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6879_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 13287769 - 13288035
Alignment:
| Q |
1 |
tattgtttttgttctaatccaaaattattgtcaaaatagacatttttcaaatggatagggtttgtgggtccatatgtatttatggtccagttgggtttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13287769 |
tattgtttttgttctaatccaaaattattgtcaaactagacatttttcaaatggatagggtttgtgggtccatatgtatttatggtccagttgggtttgt |
13287868 |
T |
|
| Q |
101 |
tgaggcccatttcctttgccacctctataatctatctatatatctcctacttcttttcgctttcattgtctaattgaataaagctagatgtggttaacac |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13287869 |
tgaggcccatttcctttgccacctctataatctatctatatatctcctacttcttttcgctttcattgtctaattgaataaagctagatgtggttaacac |
13287968 |
T |
|
| Q |
201 |
atcatgcaaaaaataggtactaaaaatggtaataataggacaggaggtttacatgttgatgtccatc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13287969 |
atcatgcaaaaaataggtactaaaaatggtaataataggacaggaggtttacatgttgatggccatc |
13288035 |
T |
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